View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17714_low_8 (Length: 270)
Name: NF17714_low_8
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17714_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 7704262 - 7704517
Alignment:
| Q |
1 |
ggtcctaaaaaggggtgtgaagtggacagtat----atggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtgg |
96 |
Q |
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| T |
7704262 |
ggtcctaaaaaggggtgtgaagtggacagtatgtatatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtgg |
7704361 |
T |
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| Q |
97 |
taaagagccaagaagatcaattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaattaggattcatctcttcc |
196 |
Q |
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| T |
7704362 |
taaagaaccaagaagatcaattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaattaggattcatctcttcc |
7704461 |
T |
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| Q |
197 |
ctttccccttcataattcaagatattccaacttcagaagctaatttctgtcctattt |
253 |
Q |
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| T |
7704462 |
c-ttccccttcataattcaagatattccaacttcagaagctaatttctgtcctattt |
7704517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 7699585 - 7699762
Alignment:
| Q |
21 |
agtggacagtatatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaagatcaattgt |
120 |
Q |
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| T |
7699585 |
agtggacaatttacggtggaaattcaatggtgttggtgaataaaaaggtagcaagtcttggatttgtggatggtggtaaaaagccaacaacatcagttgt |
7699684 |
T |
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| Q |
121 |
tattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaattaggattcatctcttccct |
198 |
Q |
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| T |
7699685 |
tattggtgggcaccaattggaggacaatctactggagtttgatttagtttcatctaaattaggattcagctcttccct |
7699762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 7711601 - 7711783
Alignment:
| Q |
14 |
ggtgtgaagtggacagtatatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaagat |
113 |
Q |
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| T |
7711601 |
ggtgtggagtggacaatttttggtggaaattcaatggtgttggtgagtaaaaatgttgcatgtcttggatttgtggatggtggtaaagagccaagaacag |
7711700 |
T |
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| Q |
114 |
caattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaattaggattcatctcttcc |
196 |
Q |
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| T |
7711701 |
ctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttgatttcttctaaattaggattcagctcttcc |
7711783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 7726510 - 7726673
Alignment:
| Q |
35 |
ggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaagatcaattgttattggtgggcacc |
134 |
Q |
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| T |
7726510 |
ggtggaaattcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtaaagagccaagaacagctgttgttattggtggacacc |
7726609 |
T |
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| Q |
135 |
aattggaggagaatctattggagtttgatttagtttcttccaaattaggattcatctcttccct |
198 |
Q |
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| T |
7726610 |
agttggaggacattgtattggagtttgatttggtttcttctaaattaggattcagctcttccct |
7726673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 7733911 - 7734093
Alignment:
| Q |
14 |
ggtgtgaagtggacagtatatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaagat |
113 |
Q |
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| T |
7733911 |
ggtgtggagtggacaatttttggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaacag |
7734010 |
T |
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| Q |
114 |
caattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaattaggattcatctcttcc |
196 |
Q |
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| T |
7734011 |
ctgttgttattggtggacaccagttggaggacattgtattggagtttgatttggtttcttctaaattaggattcagctcttcc |
7734093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 7745993 - 7745818
Alignment:
| Q |
12 |
ggggtgtgaagtggacagtatatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaag |
111 |
Q |
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| T |
7745993 |
ggggtgtgaagtggacaatttttggtggaaattctatggccttggtgagtaaaaatgtagcatgtcttggatttgtggatggtggtaatgagccaagaac |
7745894 |
T |
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| Q |
112 |
atcaattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaattaggattc |
187 |
Q |
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| T |
7745893 |
tgctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaattaggattc |
7745818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 7774075 - 7774008
Alignment:
| Q |
113 |
tcaattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaatt |
180 |
Q |
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| T |
7774075 |
tcaattgttattggtggacatcaattggaggacaatcttttggtgtttgatttagcttcttccaaatt |
7774008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 7766748 - 7766681
Alignment:
| Q |
113 |
tcaattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaatt |
180 |
Q |
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| T |
7766748 |
tcaattgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaatt |
7766681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 7766814 - 7766766
Alignment:
| Q |
62 |
aaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaa |
110 |
Q |
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| T |
7766814 |
aaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaa |
7766766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 7774147 - 7774093
Alignment:
| Q |
56 |
gtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaa |
110 |
Q |
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| T |
7774147 |
gtgaagaaaaatgtagcatgtcttggaattgttgatggagggacagagccaagaa |
7774093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 48521693 - 48521643
Alignment:
| Q |
113 |
tcaattgttattggtgggcaccaattggaggagaatctattggagtttgat |
163 |
Q |
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| T |
48521693 |
tcaattattattggtgggcatcaattggaggataatcttgtggagtttgat |
48521643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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