View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17714_low_9 (Length: 262)
Name: NF17714_low_9
Description: NF17714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17714_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 1423572 - 1423324
Alignment:
| Q |
14 |
tactttggacaaaaacaatataatatatcacaattctaattgattcaaaccaatctttttattgatcacacctcaacatactcaataattttctcacggc |
113 |
Q |
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| T |
1423572 |
tactttggacaaaaacaatataatatatcacaattctaattgattcaaaccaatctttttattgatcacacctcaacatactcaataattttctcacggc |
1423473 |
T |
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| Q |
114 |
cttgcaagcattttggaaaggttaaacttacagaaaatgaatggttggtatcatccaggtccactgaaggaaaggctttcctaggtttgtcataatcatc |
213 |
Q |
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| T |
1423472 |
cttgcaagcattttggaaaggttaaacttacagaaaatgaatggttggtatcatccaggtccactgaaggaaaggctttcctagatttgtcataatcatc |
1423373 |
T |
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| Q |
214 |
ctcgccaatgtcagataagaaaccccataggtcatcgacagaatcaaga |
262 |
Q |
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| T |
1423372 |
ctcaccaatgtcagataagaaaccccataggtcatcgacagaatcaaga |
1423324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 17602503 - 17602551
Alignment:
| Q |
14 |
tactttggacaaaaacaatataatatatcacaattctaattgattcaaa |
62 |
Q |
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| T |
17602503 |
tactttggacaagaacaatataatatatcaaaattctaattgattcaaa |
17602551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 17602735 - 17602821
Alignment:
| Q |
178 |
tgaaggaaaggctttcctaggtttgtcataatca---tcctcgccaatgtcagataagaaaccccataggtcatcgacagaatcaag |
261 |
Q |
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| T |
17602735 |
tgaaggaaaggctttcttaggtttgtcatcatcatcgtcctcacctatgtcagatgagaaatccaagaggtcgtccacagaaccaag |
17602821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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