View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17715_low_11 (Length: 345)
Name: NF17715_low_11
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17715_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 20670867 - 20670538
Alignment:
| Q |
10 |
gacatcatcaagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtaggtatacgagagtaacgagggaggaggagg |
109 |
Q |
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| T |
20670867 |
gacatcatcaagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtagggatacgagagtaacgagggaggaggagg |
20670768 |
T |
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| Q |
110 |
aggtcagtgtagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgagggatgaagagtg |
209 |
Q |
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| T |
20670767 |
aggtcagcgtagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgaggaatgaagagtg |
20670668 |
T |
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| Q |
210 |
ttaggctaagtgatggatgtgagattgataagatgcttacccatttgtttacgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttc |
309 |
Q |
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| T |
20670667 |
ttaggctaagtgatggatgggagattgataagatgcttacccatttgtttatgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttc |
20670568 |
T |
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| Q |
310 |
ttgcattgccaatggtggagttgatgatgt |
339 |
Q |
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| T |
20670567 |
ttgcattgccaatggtggagttgatgatgt |
20670538 |
T |
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