View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17715_low_14 (Length: 228)

Name: NF17715_low_14
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17715_low_14
NF17715_low_14
[»] chr2 (5 HSPs)
chr2 (18-214)||(35278212-35278401)
chr2 (111-204)||(35283903-35283996)
chr2 (111-150)||(35309521-35309560)
chr2 (111-153)||(35325744-35325786)
chr2 (112-152)||(35318391-35318431)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 35278212 - 35278401
Alignment:
Q  18 gagatgattgttcatatattattgaacgtccattcnnnnnnnnnnnnttaatgaacgcaaagagagaatcatgttcttaccaattnnnnnnncaatagcg 117  Q
    ||||||||||||||||||||||||||||||||||             |||||||| |||||| ||||||||||||||||||||||       |||| |||    
T  35278212 gagatgattgttcatatattattgaacgtccatt---aaaaaaaaatttaatgaatgcaaagtgagaatcatgttcttaccaattaaaaaaacaattgcg 35278308  T
Q  118 tgccatgcaaaaattccaatcatccattcagcataaatgctatctaatcattaacactataaaaccattttttattggacccagtcacctactattt 214  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35278309 tgccatgcaaaaattccaatcat----tcagcataaatgctatctaatcattaacactataaaaccattttttattggacccagtcacctactattt 35278401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 35283903 - 35283996
Alignment:
Q  111 aatagcgtgccatgcaaaaattccaatcatccattcagcataaatgctat-ctaatcattaacactataaaaccattttttattggacccagtca 204  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||| | || ||||| |||||||||||||    
T  35283903 aataacgtgccatgcaaaaactccaatcatccattcagtataactgctatactaatcattaacactataataaca-tttttgttggacccagtca 35283996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 35309521 - 35309560
Alignment:
Q  111 aatagcgtgccatgcaaaaattccaatcatccattcagca 150  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  35309521 aatagcgtggcatgcaaaaactccaatcatccattcagca 35309560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 35325744 - 35325786
Alignment:
Q  111 aatagcgtgccatgcaaaaattccaatcatccattcagcataa 153  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||    
T  35325744 aatagcgtggcatgcaaaaactccaatcatccattcggcataa 35325786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 35318391 - 35318431
Alignment:
Q  112 atagcgtgccatgcaaaaattccaatcatccattcagcata 152  Q
    ||||||||||||||||||| ||| || ||||||||||||||    
T  35318391 atagcgtgccatgcaaaaactcccattatccattcagcata 35318431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University