View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17715_low_2 (Length: 723)
Name: NF17715_low_2
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17715_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 1 - 705
Target Start/End: Original strand, 37722529 - 37723232
Alignment:
| Q |
1 |
cagagatgacataaaagtctcattttcacatgtatgtagtgttagtctt-agacaaaagaaaaggacaacctcaactcaactcaagctgc---catacct |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37722529 |
cagagatgacataaaagtctcattttcacatgtatgtagtgttagtctttagacaaaagaaaaggacaacctcaactcaactcaagctgctgccatacct |
37722628 |
T |
|
| Q |
97 |
attcttggtacctaccgctacactgttccttcctctctttcttttggattggaaactatgaagcttcaaaaatggctcactagtgtgttcttgctcactc |
196 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37722629 |
attcttggtacc----gctacactgttccttcctctctttcttttggattggaaactatgaagcttcaaaaatggctcactagtttgttcttgctcactc |
37722724 |
T |
|
| Q |
197 |
ttgccactataaacaatgtattaggtaatttatgctacactcctttgtcaatctcaattattcttttcattttttctctgagttgaaaaaactattatta |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37722725 |
ttgccactataaacaatgtattaggtaatttatgctacactcctttgtcaatctcaattattcttttcattttttctttgagttgaaaaaactattatta |
37722824 |
T |
|
| Q |
297 |
ttaccatgttcagctttatactatgttcnnnnnnnnnatttcattatattatatactatggtttttcatttgtaaagattattgtgttatgtgttcttag |
396 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37722825 |
ttaccatgttcagctttatactatgttcttttttttggtttcattatattatatactatggtttttcatttgtaaagattattgtgttatgtgttcttag |
37722924 |
T |
|
| Q |
397 |
tcaaaatacgtctagccacgtattcttgtaatctttttcttcatactctgagcatatgctacttacttatttaacttcatagttagaatttttaagaata |
496 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37722925 |
tcaaaatacgtctagccacgtattcttgtaatctttt-cttcatactctgagcatatgctacttacttatttaacttcatagtcagaatttttaagaata |
37723023 |
T |
|
| Q |
497 |
atatgcctggacatttttctaagtagttgtttctaaaattttataataattgaattagagtactgtaagaaatatttttccagttgatattagatcacat |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37723024 |
atatgcctggacatttttctaagtagttgtttctaaaattttataataattgaattagagtactgtaagaaatatttttccagttgatattagatcacat |
37723123 |
T |
|
| Q |
597 |
tatttatcatgtaggtgcatttgttggggtaaacattggcactcatgttactgatctaccatcagcttcaaatatagttgctattctaaaatctcatcaa |
696 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37723124 |
tatttatcatgtaggtgcatttgtgggggtaaacattggcactcatgttactgatctaccatcagcttcaaatatagttgctattctaaaatctcatcaa |
37723223 |
T |
|
| Q |
697 |
attactcat |
705 |
Q |
| |
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||||||||| |
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| T |
37723224 |
attactcat |
37723232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 704
Target Start/End: Complemental strand, 35534229 - 35534131
Alignment:
| Q |
606 |
tgtaggtgcatttgttggggtaaacattggcactcatgttactgatctaccatcagcttcaaatatagttgctattctaaaatctcatcaaattactca |
704 |
Q |
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||||||||| ||||| ||||||||||||||||| |||| ||||| | ||||| |||||||| | ||||||||||||||| | ||||||||||||| |
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| T |
35534229 |
tgtaggtgcttttgtgggggtaaacattggcaccgatgtctctgatatgccatctgcttcaaacgtggttgctattctaaaagccaatcaaattactca |
35534131 |
T |
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