View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17715_low_3 (Length: 621)
Name: NF17715_low_3
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17715_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 37008510 - 37008989
Alignment:
| Q |
1 |
cacaagctgatttccataagcatcatcttttaccgcatcatagaatcgttgtggacattgagcaaatgcaacttctttttctccctttgaatccaacaaa |
100 |
Q |
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| T |
37008510 |
cacaagctgatttccataagcatcatcttttaccgcatcatagaatcgttgtggacattgagcaaatgcaacttctttttctccctttgaatccaacaaa |
37008609 |
T |
|
| Q |
101 |
atgcaaagggcatgtagtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttg |
200 |
Q |
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| T |
37008610 |
atgcaaagggcatgtagtacaatcttagaattgttcacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttg |
37008709 |
T |
|
| Q |
201 |
tctgtatacaatacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagtt |
300 |
Q |
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| T |
37008710 |
tctgtatacaatacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagtt |
37008809 |
T |
|
| Q |
301 |
gattgaagaaatataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37008810 |
gattgaagaaatataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgag |
37008909 |
T |
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| Q |
401 |
gcatcacatcagaaatacctttgttttctcgaattacctatcaatatatgaagtaaaacatttgatgataataaaactaa |
480 |
Q |
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| T |
37008910 |
gcatcacatcagaaatacctttgttttctcgaattacctatcaatatatgaagtaaaacatttgatgataataaaactaa |
37008989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 37025692 - 37025896
Alignment:
| Q |
1 |
cacaagctgatttccataagcatcatcttttaccgcatcatagaatcgttgtggacattgagcaaatgcaacttctttttctccctttgaatccaacaaa |
100 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||| ||||||||||| |||| ||||||||| ||||||||||||| ||||| || |||||||| |||||| |
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| T |
37025692 |
cacaagctgatttccaaaaggatcgtcttttagaccatcatagaattgttggggacattgaacaaatgcaacttccttttccccttttgaatctaacaaa |
37025791 |
T |
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| Q |
101 |
atgcaaagggcatgtagtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttg |
200 |
Q |
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| T |
37025792 |
atgcacaaggcgtgtagagcaatcttaggattgttcacgtgcatgtcacaatctaagttcaatatgaaaggagcatttgtcatcattccagagactcttg |
37025891 |
T |
|
| Q |
201 |
tctgt |
205 |
Q |
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||||| |
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| T |
37025892 |
tctgt |
37025896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 481 - 608
Target Start/End: Original strand, 37009734 - 37009867
Alignment:
| Q |
481 |
ttaaggactcatcatttatatatcgtgtagcagatagnnnnnnnctttgataaaatattgtgacacatctaaatgataaaatataattaga------cgt |
574 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
37009734 |
ttaaggactcatcatttatatatcgtgtagcagatagtttttttctttgataaaatattgtgacacatctaaatgataaaatataattatatgtatgtgt |
37009833 |
T |
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| Q |
575 |
aaaataattttacatttcttttgctttttagtga |
608 |
Q |
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| T |
37009834 |
aaaataattttacatttcttttgctttttagtga |
37009867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 37044743 - 37044892
Alignment:
| Q |
55 |
acattgagcaaatgcaacttctttttctccctttgaatccaacaaaatgcaaagggcatgtagtacaatcttagaattgtttacatacatgtcacaatct |
154 |
Q |
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||||||| |||| ||||| ||||| | | ||| ||||||| ||||||||||| |||||| | | |||||| | |||||| ||| ||||||||| ||| |
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| T |
37044743 |
acattgaacaaaagcaacatctttcccactcttcgaatccaccaaaatgcaaatagcatgttgcataatcttgggattgttcacaaccatgtcacagtct |
37044842 |
T |
|
| Q |
155 |
aagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
204 |
Q |
| |
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| ||| | |||||| |||||||| |||||||||||||||||||||||||| |
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| T |
37044843 |
acgttcaacataaaaggagcattggtcatcaatccagagactcttgtctg |
37044892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 37035762 - 37035801
Alignment:
| Q |
364 |
tttggcctcttctctctagatatgtagattatgtgaggca |
403 |
Q |
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| T |
37035762 |
tttggcctcttctctctagatatgtagattaagtgaggca |
37035801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 37026237 - 37026267
Alignment:
| Q |
373 |
ttctctctagatatgtagattatgtgaggca |
403 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
37026237 |
ttctctctagatatgtagattatgtgaggca |
37026267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 17657812 - 17657647
Alignment:
| Q |
39 |
catagaatcgttgtggacattgagcaaatgcaacttctttttctccctttgaatccaacaaaatgcaaagggcatgtagtacaatcttagaattgtttac |
138 |
Q |
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|||||||| | || |||||||||||||| || ||||||||||| || || || || | ||||||||| | |||||| | ||||| || | ||||||||| |
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| T |
17657812 |
catagaattgctggggacattgagcaaaagctacttctttttcccctttggagtcaagcaaaatgcacaaggcatgcataacaatatttggattgtttac |
17657713 |
T |
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| Q |
139 |
atacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
204 |
Q |
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| T |
17657712 |
aaacatgtcacaatccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtctg |
17657647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 17657564 - 17657492
Alignment:
| Q |
320 |
ttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagat |
392 |
Q |
| |
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||||||| |||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17657564 |
ttaccaacacattcatggcaccggctttgaaatgatgtggttgctttggcctcttctctctagatatgtagat |
17657492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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