View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17715_low_4 (Length: 618)
Name: NF17715_low_4
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17715_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 88 - 601
Target Start/End: Original strand, 38073155 - 38073668
Alignment:
| Q |
88 |
atttgaatccttgtttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtgttgaaatg |
187 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||| || | |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
38073155 |
atttcaatccttgtttctaggaagtgtagataacctcttacccttgatggaagaaaagtttcctgaacttggtttggttagagaagattgtgttgaaatg |
38073254 |
T |
|
| Q |
188 |
agttggattgaatcggttctttacctttttcggtttccagaaggcgaaccacttgaaacgttgctcaacagaacactagctgcaaaggataattccaaag |
287 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38073255 |
agttggattgaatcagttctttacctttttcggtttccagaaggcgaaccacttgaaacgttgctcaacagaacactagctgcaaaggataattccaaag |
38073354 |
T |
|
| Q |
288 |
cgaaatctgattttgtcaaaattcctattcctgaaactggtttagaaggattatggcctttgtttgatgaagatggtgcggaagatgtactaatggtatt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38073355 |
cgaaatctgattttgtcaaaattcctattcctgaaactggtttagaaggattatggcctttgtttgatgaagatggtgcggaagatgtactaatggtatt |
38073454 |
T |
|
| Q |
388 |
gtttccttatggtgccataatggataagatttcagaatctgaaattccatttccacatagatatggaaccttatacaaaattcagtatgcagtgcactgg |
487 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38073455 |
gtttccttatggtggcataatggataagatttcagaatctgaaattccatttccacatagatatggaaccttatacaaaattcaatatgcagtgcactgg |
38073554 |
T |
|
| Q |
488 |
catcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcat |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38073555 |
catcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcat |
38073654 |
T |
|
| Q |
588 |
atattaattataga |
601 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38073655 |
atattaattataga |
38073668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 96 - 601
Target Start/End: Original strand, 38058829 - 38059334
Alignment:
| Q |
96 |
ccttgtttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtgttgaaatgagttggat |
195 |
Q |
| |
|
|||||||||||||||| |||||| || || | ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
38058829 |
ccttgtttcttggaggagtagataagctcatacacttgatgcaagagaagtttcctgagcttggtttggttagagaagattgtgttgagatgagttgggt |
38058928 |
T |
|
| Q |
196 |
tgaatcggttctttacctttttcggtttccagaaggcgaaccacttgaaacgttgctcaacagaacactagctgcaaaggataattccaaagcgaaatct |
295 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||| |
|
|
| T |
38058929 |
tgaatcagttctttacctttacgggtttccgaaagacgaaccacttgaaacgttgctcaacagaacacttgctgcaaaggatatttacaaagtaaaatct |
38059028 |
T |
|
| Q |
296 |
gattttgtcaaaattcctattcctgaaactggtttagaaggattatggcctttgtttgatgaagatggtgcggaagatgtactaatggtattgtttcctt |
395 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| ||||||||| |||||||| ||||| ||||||||||||| |||||| | || ||| ||||||| |
|
|
| T |
38059029 |
gattttgtcaaaattcccattcctgaagttggattagaaggaatatggcctatgtttcatgaagatggtgccaaagatgccatggtgatatgttttcctt |
38059128 |
T |
|
| Q |
396 |
atggtgccataatggataagatttcagaatctgaaattccatttccacatagatatggaaccttatacaaaattcagtatgcagtgcactggcatcaaga |
495 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||||||||||||||| ||| |||||| ||||| ||||| | || |||| || ||||||||||| |
|
|
| T |
38059129 |
atggtggcataatggataatatttcagagtctgaaattccatttccacacagacatggaaatttatatcaaatttattactcagttcattggcatcaaga |
38059228 |
T |
|
| Q |
496 |
aggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaat |
595 |
Q |
| |
|
| |||||||||| ||||| || | || ||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38059229 |
aagtgatgaggtagaaaaaatgaaaatgaattggattggaaaattgtacagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaac |
38059328 |
T |
|
| Q |
596 |
tataga |
601 |
Q |
| |
|
|||||| |
|
|
| T |
38059329 |
tataga |
38059334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 96 - 601
Target Start/End: Complemental strand, 38061625 - 38061120
Alignment:
| Q |
96 |
ccttgtttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtgttgaaatgagttggat |
195 |
Q |
| |
|
|||||||||||||| |||||||| ||| || ||||||||| |||| |||||||||| |||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
38061625 |
ccttgtttcttggaagtgtagataaactcattcccttgatgaaagaaaagtttccagaacttggtttggttagagaagattgtattgagatgagttggat |
38061526 |
T |
|
| Q |
196 |
tgaatcggttctttacctttttcggtttccagaaggcgaaccacttgaaacgttgctcaacagaacactagctgcaaaggataattccaaagcgaaatct |
295 |
Q |
| |
|
|||||||||||||||||||| | | ||||| |||||||| ||| ||||| ||||||||||||||||| |||||||||||||| || ||||| || ||| |
|
|
| T |
38061525 |
tgaatcggttctttacctttatggatttccgaaaggcgaatcacctgaaatgttgctcaacagaacacaagctgcaaaggatattttcaaagtaaagtct |
38061426 |
T |
|
| Q |
296 |
gattttgtcaaaattcctattcctgaaactggtttagaaggattatggcctttgtttgatgaagatggtgcggaagatgtactaatggtattgtttcctt |
395 |
Q |
| |
|
|||||||| | |||||| ||| |||||| ||| |||||| || | |||| | ||||| ||||||||||||| ||||| | | || || ||||||| |
|
|
| T |
38061425 |
gattttgtgagaattcccatttctgaaattggattagaaagaatgtggcgtatgtttcatgaagatggtgccaaagattcaatggtgtatttttttcctt |
38061326 |
T |
|
| Q |
396 |
atggtgccataatggataagatttcagaatctgaaattccatttccacatagatatggaaccttatacaaaattcagtatgcagtgcactggcatcaaga |
495 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||| ||||||||||||||||||||||||||| |||||| ||||| ||| | || || ||||||||||| |
|
|
| T |
38061325 |
atggtggcataatgaataatatttcagagtctaaaattccatttccacatagatatggaaatttataccaaattttgtactcggttcattggcatcaaga |
38061226 |
T |
|
| Q |
496 |
aggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaat |
595 |
Q |
| |
|
| |||||||||||||||| | | || ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
38061225 |
aagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagttttatggaaccttttgtttcaaagtcaccaagagctgcatatatcaat |
38061126 |
T |
|
| Q |
596 |
tataga |
601 |
Q |
| |
|
|||||| |
|
|
| T |
38061125 |
tataga |
38061120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 98 - 597
Target Start/End: Original strand, 38086675 - 38087174
Alignment:
| Q |
98 |
ttgtttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtgttgaaatgagttggattg |
197 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||| | ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
38086675 |
ttgtttcttggaggtgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattg |
38086774 |
T |
|
| Q |
198 |
aatcggttctttacctttttcggtttccagaaggcgaaccacttgaaacgttgctcaacagaacactagctgcaaaggataattccaaagcgaaatctga |
297 |
Q |
| |
|
|||| ||||||||| |||||| ||||||| |||| ||| |||| |||||| |||||||||| |||| || |||| | |||||| |||||||| |
|
|
| T |
38086775 |
aatctgttctttacttttttcagtttccaaaaggttctacacctgaagtgttgcttaacagaacacaagctacacttgatatattcaaagcaaaatctga |
38086874 |
T |
|
| Q |
298 |
ttttgtcaaaattcctattcctgaaactggtttagaaggattatggcctttgtttgatgaagatggtgcggaagatgtactaatggtattgtttccttat |
397 |
Q |
| |
|
|||||| | |||||| |||||||||||||| |||||||| |||||||||| ||||||||||| ||| | |||||| | | ||| ||| |||||| ||| |
|
|
| T |
38086875 |
ttttgtgagaattccaattcctgaaactggattagaaggcatatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatat |
38086974 |
T |
|
| Q |
398 |
ggtgccataatggataagatttcagaatctgaaattccatttccacatagatatggaaccttatacaaaattcagtatgcagtgcactggcatcaagaag |
497 |
Q |
| |
|
|||| || |||||||| |||||||| ||||||||||||||||| |||||| ||||| ||||| || ||||| || | || || ||||||||||||| |
|
|
| T |
38086975 |
ggtggcaaaatggatactatttcagagtctgaaattccatttcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaagaag |
38087074 |
T |
|
| Q |
498 |
gtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaatta |
597 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
38087075 |
gtgatgaggtggaaacactgcacattaattggattagaaaactgtatagttatatggaaccttttgttacaaagtctccgagagctgcatatattaatta |
38087174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 37954393 - 37954593
Alignment:
| Q |
1 |
taagcttgatgaggacttaaacattagggtcattttggagagggtgaatacaagtactcaaacaaggaaactgacaataaaagcgacatttgaatccttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37954393 |
taagcttgatgaggacttaaacattagggtcattttggagagggtgaatacaagtactcaaacaaggaaactgacaataaaagccacatttgaatccttg |
37954492 |
T |
|
| Q |
101 |
tttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtgttgaaatgagttggattgaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
37954493 |
tttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtactgagatgagttggattgaat |
37954592 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
37954593 |
c |
37954593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 96 - 601
Target Start/End: Original strand, 38082236 - 38082750
Alignment:
| Q |
96 |
ccttgtttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtgttgaaatgagttggat |
195 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||| | ||||||| ||| | ||| |||| |||||| ||||| |||||||||||||||| |
|
|
| T |
38082236 |
ccttgtttcttggaggtgtagataaactcattcccttgatggatcaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggat |
38082335 |
T |
|
| Q |
196 |
tgaatcggttctttacctttttcggtttccagaaggcgaaccacttgaaacgttgctcaacagaacactagctgcaaag-------gat--aattccaaa |
286 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| | | || |||| |||||| |||||||||||||||||||| ||| | || |||| |
|
|
| T |
38082336 |
tgaatcggttctttacctttttcaatttccgaaaggtgcattacctgaagtgttgcttaacagaacactagctgcaaacagcccaagatttatttacaaa |
38082435 |
T |
|
| Q |
287 |
gcgaaatctgattttgtcaaaattcctattcctgaaactggtttagaaggattatggcctttgtttgatgaagatggtgcggaagatgtactaatggtat |
386 |
Q |
| |
|
|| |||||||||||||| |||| ||| |||||||||| ||| ||||||||| ||||| |||||||| ||||||| ||||| ||| || | | ||| ||| |
|
|
| T |
38082436 |
gcaaaatctgattttgtgaaaactcccattcctgaaaatggattagaaggaatatggtctttgtttcatgaagaaggtgccaaaggtgcaatgatgatat |
38082535 |
T |
|
| Q |
387 |
tgtttccttatggtgccataatggataagatttcagaatctgaaattccatttccacatagatatggaaccttatacaaaattcagtatgcagtgcactg |
486 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| | |||| ||||| | ||||| || || | || |
|
|
| T |
38082536 |
ggtttccttatggtggaataatggatactatttcagagtctgaaattccatttccacatagaaaaggaaatttatatcatattcattaccaggttgattg |
38082635 |
T |
|
| Q |
487 |
gcatcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgca |
586 |
Q |
| |
|
||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
38082636 |
gcaacaggaaggtgatgaggtggaaaaactgcacattaattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctgga |
38082735 |
T |
|
| Q |
587 |
tatattaattataga |
601 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
38082736 |
tacatcaattataga |
38082750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 494 - 601
Target Start/End: Original strand, 37954898 - 37955005
Alignment:
| Q |
494 |
gaaggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatatta |
593 |
Q |
| |
|
||||||||| |||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | | |
|
|
| T |
37954898 |
gaaggtgataaggtagaaaaaaggcacataaattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtga |
37954997 |
T |
|
| Q |
594 |
attataga |
601 |
Q |
| |
|
|||||||| |
|
|
| T |
37954998 |
attataga |
37955005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 387 - 454
Target Start/End: Original strand, 38078144 - 38078211
Alignment:
| Q |
387 |
tgtttccttatggtgccataatggataagatttcagaatctgaaattccatttccacatagatatgga |
454 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38078144 |
tgtttccttatggtggcataatggataatatttcagaatttgaaattccatttccacatagatatgga |
38078211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 38078035 - 38078103
Alignment:
| Q |
105 |
ttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaag |
173 |
Q |
| |
|
||||||||||||||| ||| || ||||||||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
38078035 |
ttggaggtgtagatgaactcatgcccttgatgcaagagaagtttcctgagcttggtttggttagagaag |
38078103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 589
Target Start/End: Original strand, 2197404 - 2197458
Alignment:
| Q |
535 |
aaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatat |
589 |
Q |
| |
|
|||||||||||| || ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
2197404 |
aaaactttatagatacatgactccttatgtttcaaagtctccaagagctgcatat |
2197458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 589
Target Start/End: Original strand, 2153227 - 2153259
Alignment:
| Q |
557 |
ccttttgtttcaaagtctccaagagctgcatat |
589 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
2153227 |
ccttatgtttcaaagtctccaagagctgcatat |
2153259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 589
Target Start/End: Original strand, 2176886 - 2176918
Alignment:
| Q |
557 |
ccttttgtttcaaagtctccaagagctgcatat |
589 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
2176886 |
ccttatgtttcaaagtctccaagagctgcatat |
2176918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 589
Target Start/End: Original strand, 2184841 - 2184873
Alignment:
| Q |
557 |
ccttttgtttcaaagtctccaagagctgcatat |
589 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
2184841 |
ccttatgtttcaaagtctccaagagctgcatat |
2184873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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