View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17715_low_5 (Length: 603)

Name: NF17715_low_5
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17715_low_5
NF17715_low_5
[»] scaffold0455 (1 HSPs)
scaffold0455 (16-595)||(11375-11954)
[»] chr6 (12 HSPs)
chr6 (16-595)||(28133339-28133918)
chr6 (181-588)||(28176486-28176895)
chr6 (144-588)||(28219212-28219662)
chr6 (238-585)||(28116429-28116776)
chr6 (368-588)||(28220218-28220435)
chr6 (314-515)||(28177484-28177685)
chr6 (21-143)||(28220759-28220881)
chr6 (388-455)||(32279617-32279684)
chr6 (553-588)||(28177447-28177482)
chr6 (388-455)||(29729667-29729734)
chr6 (237-295)||(28220457-28220515)
chr6 (397-453)||(32799459-32799515)
[»] scaffold0038 (4 HSPs)
scaffold0038 (144-588)||(19710-20160)
scaffold0038 (368-588)||(20716-20933)
scaffold0038 (21-143)||(21257-21379)
scaffold0038 (237-295)||(20955-21013)
[»] chr5 (6 HSPs)
chr5 (388-455)||(14001123-14001190)
chr5 (388-455)||(18282269-18282336)
chr5 (25-146)||(9816077-9816205)
chr5 (388-455)||(29686227-29686294)
chr5 (375-453)||(14000849-14000927)
chr5 (387-455)||(23085343-23085411)
[»] chr2 (9 HSPs)
chr2 (375-455)||(23914563-23914643)
chr2 (385-454)||(744910-744979)
chr2 (388-455)||(11694216-11694283)
chr2 (388-453)||(35468724-35468789)
chr2 (387-455)||(12599519-12599587)
chr2 (388-455)||(11681642-11681709)
chr2 (386-452)||(6786728-6786794)
chr2 (385-458)||(13277929-13278001)
chr2 (418-455)||(28189230-28189267)
[»] chr7 (9 HSPs)
chr7 (385-454)||(43358746-43358815)
chr7 (388-455)||(3434021-3434087)
chr7 (375-453)||(7192301-7192382)
chr7 (402-452)||(7606262-7606312)
chr7 (397-453)||(10039634-10039690)
chr7 (375-453)||(5468068-5468146)
chr7 (387-455)||(28069673-28069742)
chr7 (375-455)||(24649959-24650039)
chr7 (419-455)||(38237486-38237522)
[»] chr4 (7 HSPs)
chr4 (375-455)||(10214327-10214407)
chr4 (388-453)||(24670087-24670152)
chr4 (392-455)||(48458044-48458107)
chr4 (375-452)||(47044843-47044920)
chr4 (396-452)||(7456642-7456698)
chr4 (419-455)||(21038538-21038574)
chr4 (375-455)||(46250891-46250971)
[»] chr3 (4 HSPs)
chr3 (387-455)||(50585738-50585806)
chr3 (404-454)||(28247325-28247375)
chr3 (388-455)||(2594478-2594545)
chr3 (395-455)||(36643588-36643648)
[»] chr8 (7 HSPs)
chr8 (388-455)||(1284155-1284222)
chr8 (385-455)||(3501394-3501464)
chr8 (385-455)||(11420422-11420492)
chr8 (375-453)||(34151099-34151177)
chr8 (390-455)||(4438535-4438600)
chr8 (397-454)||(36067954-36068011)
chr8 (403-455)||(2442259-2442311)
[»] chr1 (8 HSPs)
chr1 (388-455)||(8659205-8659272)
chr1 (385-453)||(6295051-6295119)
chr1 (388-455)||(12294446-12294512)
chr1 (387-453)||(10427483-10427548)
chr1 (418-455)||(26542695-26542732)
chr1 (397-454)||(51229291-51229348)
chr1 (31-63)||(1718305-1718337)
chr1 (401-453)||(36564079-36564131)
[»] scaffold0009 (1 HSPs)
scaffold0009 (419-455)||(53728-53764)


Alignment Details
Target: scaffold0455 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 16 - 595
Target Start/End: Complemental strand, 11954 - 11375
Alignment:
Q  16 cttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11954 cttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaa 11855  T
Q  116 tgcttataacacatgcttacaatcctcaatattgtccaccccgtcccgaaacccggacatacatatgtataggcatgaacatataacaccctcttcaaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854 tgcttataacacatgcttacaatcctcaatattgtccaccccgtcccgaaacccggacatacatatgtataggcatgaacatataacaccctcttcaaag 11755  T
Q  216 catgttgtgctcattctcgttcctaagtggaataaaaaatatggagaaaaaatatattgaagtttattctttaataaagaattgtatcagtaatctatac 315  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11754 catgttgtgctctttctcgttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatac 11655  T
Q  316 ttctatactatttacaaagagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11654 ttctatactatttacaaagagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagt 11555  T
Q  416 ttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaa 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  11554 ttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatactaaatgattcatagtcacaa 11455  T
Q  516 caataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccctttgct 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11454 caataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccccttgct 11375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 560; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 16 - 595
Target Start/End: Complemental strand, 28133918 - 28133339
Alignment:
Q  16 cttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28133918 cttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaa 28133819  T
Q  116 tgcttataacacatgcttacaatcctcaatattgtccaccccgtcccgaaacccggacatacatatgtataggcatgaacatataacaccctcttcaaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28133818 tgcttataacacatgcttacaatcctcaatattgtccaccccgtcccgaaacccggacatacatatgtataggcatgaacatataacaccctcttcaaag 28133719  T
Q  216 catgttgtgctcattctcgttcctaagtggaataaaaaatatggagaaaaaatatattgaagtttattctttaataaagaattgtatcagtaatctatac 315  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28133718 catgttgtgctctttctcgttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatac 28133619  T
Q  316 ttctatactatttacaaagagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28133618 ttctatactatttacaaagagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagt 28133519  T
Q  416 ttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaa 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  28133518 ttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatactaaatgattcatagtcacaa 28133419  T
Q  516 caataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccctttgct 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28133418 caataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccccttgct 28133339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 181 - 588
Target Start/End: Original strand, 28176486 - 28176895
Alignment:
Q  181 tgtataggcatgaacatataacaccctcttcaaagcatgttgtgctcattctcgttcctaagtggaataaaaaatatggagaaaaa-atatattgaagtt 279  Q
    ||||||||||||||||||||  |||||||||||||| || |||||||||||||||||| | ||||||||||||| ||||| ||||| ||||||| ||||     
T  28176486 tgtataggcatgaacatatattaccctcttcaaagcctggtgtgctcattctcgttccaacgtggaataaaaaacatggaaaaaaatatatatttaagtc 28176585  T
Q  280 tattctttaataaa-gaattgtatcagtaatctatacttctatactatttacaaagagaatgcatagttttaagatgactttttcgcttcaaattatata 378  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  |||||||||    
T  28176586 tactctttaataaaagaattgtatcagtaatctatacttctatactatttacaaagagaatgtatagttttaagctgactttttcgctttcaattatata 28176685  T
Q  379 cccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaagatagttccttat 478  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||    
T  28176686 cccgtaaataaatttgactataagaatgttatttagttgatgtcactgcaaaaaataagaatttatattatatttgtcattgcataagatacttccttat 28176785  T
Q  479 taagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattcatatattggtc 578  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  28176786 taagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactgtagatatgtggcattcatatattggtc 28176885  T
Q  579 aaaatttgcc 588  Q
    |||| |||||    
T  28176886 aaaagttgcc 28176895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 144 - 588
Target Start/End: Original strand, 28219212 - 28219662
Alignment:
Q  144 atattgtccaccccgtcccgaaacccggacatacatatgtataggcatgaacatataacaccctcttcaaagcatgttgtgctcattctcgttcctaagt 243  Q
    |||||| |||||||   ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||| ||    
T  28219212 atattgcccaccccactccgaaacccggacatacatctgtataggcatgaacatatagtaccctcttcaaagcatgtggtgctcattctcgttcctacgt 28219311  T
Q  244 ggaataaaaaa---tatggagaaaa-aatatattgaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagagaat 339  Q
    |||||||||||   ||| ||||||| |||||||| ||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  28219312 ggaataaaaaaaaatatagagaaaaaaatatatttaagtcaattctttaataaagaattgtatcactaatctatacttatatactatttacaaagagaat 28219411  T
Q  340 gcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaa 439  Q
    ||||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||    
T  28219412 gcatagttttaagctgagattttcgcttccaattatatacccgttaataaatttgactataagaatgttatttagtt--tgtcattgcaaaagataagaa 28219509  T
Q  440 tttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaa 539  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||    
T  28219510 tttatattatatttgtctttgcataagatacttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcataaaataccaa 28219609  T
Q  540 ttgcaaaaactgcagatatg--tg--gcattcatatattggtcaaaatttgcc 588  Q
    ||||||| | || |||||||  ||   |||||||||||||||||||| |||||    
T  28219610 ttgcaaagaatgtagatatgcatgcaacattcatatattggtcaaaagttgcc 28219662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 238 - 585
Target Start/End: Original strand, 28116429 - 28116776
Alignment:
Q  238 ctaagtggaataaaaaatatggagaaaaaatatattgaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagaga 337  Q
    |||| |||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  28116429 ctaattggaataaaaaatatggagaaagaatatatttaagtatattctttaataaagaattgtatcaatgatctatacttctatactatttacgaagaga 28116528  T
Q  338 atgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaa 437  Q
    ||||||||| ||||| ||| ||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28116529 atgcatagtattaagctgattttttcgcttccaattatatacgcgtaaattaatttgactataagaatgttatttagtttatgtcactgcaaaagataaa 28116628  T
Q  438 aatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaatacc 537  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||    
T  28116629 aatttatattatatttgtcattgcaaaagatgcttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcgtaaattacc 28116728  T
Q  538 aattgcaaaaactgcagatatgtggcattcatatattggtcaaaattt 585  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||    
T  28116729 aattgcaaaaactttaaatatgtggcattcatatattggtcaaaattt 28116776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 368 - 588
Target Start/End: Complemental strand, 28220435 - 28220218
Alignment:
Q  368 caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaaga 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  28220435 caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatatttttcattgcaaaaga 28220336  T
Q  468 tagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattc 567  Q
    || |||||||||||||||||||||||||   ||||||||||||||||||| |||||  |||||||| |||| ||||||||||||  ||||||||||||||    
T  28220335 tacttccttattaagtaatttagaatat---atgattcatagtcacaacattaatacatcgtaaaagaccagttgcaaaaactgttgatatgtggcattc 28220239  T
Q  568 atatattggtcaaaatttgcc 588  Q
    |||||||||||||||| ||||    
T  28220238 atatattggtcaaaatgtgcc 28220218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 314 - 515
Target Start/End: Complemental strand, 28177685 - 28177484
Alignment:
Q  314 acttctatactatttacaaagagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttattta 413  Q
    |||||||||||||||| ||||||||| ||| |||||||| ||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  28177685 acttctatactatttataaagagaatacattgttttaagctgactttttggcttccaattatatacccgttaatatatttgattataagaatgttattta 28177586  T
Q  414 gtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcac 513  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  28177585 gtttatgtcattgcaaaagataataatttatattatatttttcattgaaaaagatacttccttattaagtaatttataatattaaatgattcatagtcac 28177486  T
Q  514 aa 515  Q
    ||    
T  28177485 aa 28177484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 28220881 - 28220759
Alignment:
Q  21 atcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaatgctt 120  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  28220881 atcgttgcttccatttgcatcttcaaaatcttccttcaaactgtattgattgctcaaactctgctaaatatgatgaagaacaatggacgattaaatgctt 28220782  T
Q  121 ataacacatgcttacaatcctca 143  Q
    |||| ||||||||||||||||||    
T  28220781 ataaaacatgcttacaatcctca 28220759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 32279684 - 32279617
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||| |||| |||||||||| |||  |||||||  ||||||||| ||||||||||||||||||    
T  32279684 aaatttgaccataaaaatgttattttgttggtgtcattaaaaaagataagaatttatattatatttgt 32279617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 588
Target Start/End: Complemental strand, 28177482 - 28177447
Alignment:
Q  553 agatatgtggcattcatatattggtcaaaatttgcc 588  Q
    ||||||||||||||||||||||||||||||| ||||    
T  28177482 agatatgtggcattcatatattggtcaaaatgtgcc 28177447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 29729734 - 29729667
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||||||||| |  ||||||| ||| || |||||  ||||||||| ||||||||||||||||||    
T  29729734 aaatttgactataaaatagttattttgttgatttcattaaaaaagataagaatttatattatatttgt 29729667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 28220515 - 28220457
Alignment:
Q  237 cctaagtggaataaaaaatatggagaaaaaatatattgaagtttattctttaataaaga 295  Q
    ||||||||||| | | ||||||||||||||||||||| ||||  ||||||| |||||||    
T  28220515 cctaagtggaaaatacaatatggagaaaaaatatatttaagtcaattctttcataaaga 28220457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 32799515 - 32799459
Alignment:
Q  397 tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    |||||||||||||| | ||| ||| ||||  ||||||||||||| ||||||||||||    
T  32799515 tataagaatgttatattgttgatgacattcaaaaagataaaaatctatattatattt 32799459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 144 - 588
Target Start/End: Original strand, 19710 - 20160
Alignment:
Q  144 atattgtccaccccgtcccgaaacccggacatacatatgtataggcatgaacatataacaccctcttcaaagcatgttgtgctcattctcgttcctaagt 243  Q
    |||||| |||||||   ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||| ||    
T  19710 atattgcccaccccactccgaaacccggacatacatctgtataggcatgaacatatagtaccctcttcaaagcatgtggtgctcattctcgttcctacgt 19809  T
Q  244 ggaataaaaaa---tatggagaaaa-aatatattgaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagagaat 339  Q
    |||||||||||   ||| ||||||| |||||||| ||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  19810 ggaataaaaaaaaatatagagaaaaaaatatatttaagtcaattctttaataaagaattgtatcactaatctatacttatatactatttacaaagagaat 19909  T
Q  340 gcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaa 439  Q
    ||||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||    
T  19910 gcatagttttaagctgagattttcgcttccaattatatacccgttaataaatttgactataagaatgttatttagtt--tgtcattgcaaaagataagaa 20007  T
Q  440 tttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaa 539  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||    
T  20008 tttatattatatttgtctttgcataagatacttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcataaaataccaa 20107  T
Q  540 ttgcaaaaactgcagatatg--tg--gcattcatatattggtcaaaatttgcc 588  Q
    ||||||| | || |||||||  ||   |||||||||||||||||||| |||||    
T  20108 ttgcaaagaatgtagatatgcatgcaacattcatatattggtcaaaagttgcc 20160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 368 - 588
Target Start/End: Complemental strand, 20933 - 20716
Alignment:
Q  368 caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaaga 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  20933 caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatatttttcattgcaaaaga 20834  T
Q  468 tagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattc 567  Q
    || |||||||||||||||||||||||||   ||||||||||||||||||| |||||  |||||||| |||| ||||||||||||  ||||||||||||||    
T  20833 tacttccttattaagtaatttagaatat---atgattcatagtcacaacattaatacatcgtaaaagaccagttgcaaaaactgttgatatgtggcattc 20737  T
Q  568 atatattggtcaaaatttgcc 588  Q
    |||||||||||||||| ||||    
T  20736 atatattggtcaaaatgtgcc 20716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 21379 - 21257
Alignment:
Q  21 atcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaatgctt 120  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  21379 atcgttgcttccatttgcatcttcaaaatcttccttcaaactgtattgattgctcaaactctgctaaatatgatgaagaacaatggacgattaaatgctt 21280  T
Q  121 ataacacatgcttacaatcctca 143  Q
    |||| ||||||||||||||||||    
T  21279 ataaaacatgcttacaatcctca 21257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 21013 - 20955
Alignment:
Q  237 cctaagtggaataaaaaatatggagaaaaaatatattgaagtttattctttaataaaga 295  Q
    ||||||||||| | | ||||||||||||||||||||| ||||  ||||||| |||||||    
T  21013 cctaagtggaaaatacaatatggagaaaaaatatatttaagtcaattctttcataaaga 20955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 14001190 - 14001123
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||| ||||||||||||||| ||| ||||||||  ||||||||| ||||||||||||||||||    
T  14001190 aaatttgacaataagaatgttattttgttgatgtcattcaaaaagataagaatttatattatatttgt 14001123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 18282336 - 18282269
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||||||||||||| |||||| |||  |||||||  ||||||||||||||| |||| |||||||    
T  18282336 aaatttgactataagaatattattttgttggtgtcattcaaaaagataaaaatttgtattctatttgt 18282269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 9816205 - 9816077
Alignment:
Q  25 ttgcttccatttgcatcttcaaaatcttccttcaaa--cactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaatgctta- 121  Q
    ||||||| ||||||||||||| ||||||||| ||||  | |||||||| | ||||| ||| ||||| | |||| |||||| | | ||||||||| ||||     
T  9816205 ttgcttcgatttgcatcttcagaatcttcctccaaactccctattgaaagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttag 9816106  T
Q  122 ----taacacatgcttacaatcctcaata 146  Q
        ||||||| |||||||||||||||||    
T  9816105 attttaacacaggcttacaatcctcaata 9816077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 29686294 - 29686227
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||| ||||||||||||||| ||  ||  |||||||  ||||||||| ||||||||||||||||||    
T  29686294 aaattttactataagaatgttaatttattggtgtcattcaaaaagataagaatttatattatatttgt 29686227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 14000927 - 14000849
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    ||||||| | || |||||||||||||  ||||  |||| |||  |||||||  ||||||||||||||||||||||||||    
T  14000927 tatacccttaaacaaatttgactatagaaatgcaattttgttggtgtcattaaaaaagataaaaatttatattatattt 14000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 23085411 - 23085343
Alignment:
Q  387 taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||| || ||||||||||||| |||  ||||| |  |||| |||| ||||||||||||||||||    
T  23085411 taaatttgattaaaagaatgttattttgttggtgtcagttaaaaaaataagaatttatattatatttgt 23085343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 23914563 - 23914643
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||| | || ||||||| ||||||||||||||| | |||| ||| |||| ||||||||| ||||||||||||||||||    
T  23914563 tatacccttaaacaaatttggctataagaatgttatattgtttgtgttattgaaaaagataagaatttatattatatttgt 23914643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 744979 - 744910
Alignment:
Q  385 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 454  Q
    |||||||||| ||||||||||||||| | |||  ||| |||  |||||||||||||||||||||||||||    
T  744979 aataaatttgtctataagaatgttatattgttggtgttatttaaaaagataaaaatttatattatatttg 744910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 11694283 - 11694216
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||| ||||||||| ||||| |||  |||||||  |||| |||||||||||||||||||||||    
T  11694283 aaatttgaccataagaatgctattttgttggtgtcattcaaaaatataaaaatttatattatatttgt 11694216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 35468724 - 35468789
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    ||||||||||||||||||||||||| |||  ||||| |  |||| |||| ||||||||||||||||    
T  35468724 aaatttgactataagaatgttattttgttggtgtcaataaaaaatataagaatttatattatattt 35468789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 12599519 - 12599587
Alignment:
Q  387 taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||||| |||| ||| |||||| ||| ||||||||   |||||||| ||||||||||||||||||    
T  12599519 taaatttgacgataaaaatattattttgttgatgtcattaagaaagataagaatttatattatatttgt 12599587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 11681709 - 11681642
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||| ||||||||| |||||  ||  |||||||  |||| |||||||||||||||||||||||    
T  11681709 aaatttgaccataagaatgctatttgattggtgtcattcaaaaatataaaaatttatattatatttgt 11681642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 452
Target Start/End: Complemental strand, 6786794 - 6786728
Alignment:
Q  386 ataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt 452  Q
    |||||||| |||||||||||| ||||| |||  |||||||  ||||||| |||||||||| ||||||    
T  6786794 ataaattttactataagaatgctattttgttggtgtcatttaaaaagattaaaatttatactatatt 6786728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 13277929 - 13278001
Alignment:
Q  385 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcat 458  Q
    |||||||||| |||||| |||||||| | |||  ||| |||| ||||||||| ||||||||||||||| |||||    
T  13277929 aataaatttgcctataacaatgttatattgttagtgttattg-aaaagataataatttatattatattagtcat 13278001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 28189230 - 28189267
Alignment:
Q  418 atgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  28189230 atgtcattacaaaagatacaaatttatattatatttgt 28189267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 43358746 - 43358815
Alignment:
Q  385 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 454  Q
    ||||||||||||||||| |||||||||| |||  ||| |||  ||||||||| |||||||||||||||||    
T  43358746 aataaatttgactataaaaatgttattttgttggtgtaatttaaaaagataagaatttatattatatttg 43358815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 3434021 - 3434087
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||||||||||||||||||| |||   |||||| |||| ||||| ||||||||||||||||||    
T  3434021 aaatttgactataagaatgttattttgttagggtcatt-caaatgataagaatttatattatatttgt 3434087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 7192382 - 7192301
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgtta---tttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    ||||||| | |||||||||||||||||||||||||   ||| |||| ||| |||  ||||||||| ||||||||||||||||    
T  7192382 tatacccttaaataaatttgactataagaatgttaattttttgtttgtgttatttaaaaagataagaatttatattatattt 7192301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 7606262 - 7606312
Alignment:
Q  402 gaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt 452  Q
    ||||||||||| ||| ||||||||  |||||||||||||||||||||||||    
T  7606262 gaatgttattttgttgatgtcattcaaaaagataaaaatttatattatatt 7606312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 10039690 - 10039634
Alignment:
Q  397 tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    |||||| ||||||||| |||  |||||||  ||||||||||||||||||||||||||    
T  10039690 tataagcatgttattttgttggtgtcattagaaaagataaaaatttatattatattt 10039634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 5468068 - 5468146
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    ||||||||| |||||||||  |||||| |||||||| |  || ||||||||| ||||||||| |  |||||||||||||    
T  5468068 tatacccgtaaataaatttttctataataatgttatattattgatgtcattgaaaaagataagatcttatattatattt 5468146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 28069742 - 28069673
Alignment:
Q  387 taaatttgactataagaatgtt-atttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||||| |||| |||||| |||| |||  |||||||  ||||||||| ||||||||||||||||||    
T  28069742 taaatttgacaataaaaatgtttattttgttagtgtcattcaaaaagataagaatttatattatatttgt 28069673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 24649959 - 24650039
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||| |||  |||||| || ||||||||||||||| ||   | |||||  ||||||||| ||||||||||||||||||    
T  24649959 tataccctttagcaaatttaaccataagaatgttattttgtcggtctcattcaaaaagataagaatttatattatatttgt 24650039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 455
Target Start/End: Complemental strand, 38237522 - 38237486
Alignment:
Q  419 tgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  38237522 tgtcattgaaaaagataagaatttatattatatttgt 38237486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 10214407 - 10214327
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||| | |||||||||||||||||||||||||||| |||  |||||||  || | |||| ||||| ||||||||||||    
T  10214407 tatacccttaaataaatttgactataagaatgttattttgttggtgtcattcaaatatataagaatttgtattatatttgt 10214327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 24670087 - 24670152
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    ||||||| ||||||||||||||| |  ||||||| |||  ||||||||| ||||||||||||||||    
T  24670087 aaatttgtctataagaatgttatattttttatgttatttaaaaagataagaatttatattatattt 24670152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 48458044 - 48458107
Alignment:
Q  392 ttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||||||||| ||||| |||| ||| |||  ||||||||| | ||||||||||||||||    
T  48458044 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgt 48458107  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 452
Target Start/End: Complemental strand, 47044920 - 47044843
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt 452  Q
    ||||||| | || |||||||| |||||||||||||||| | |  ||| |||| ||||||||| |||||| ||||||||    
T  47044920 tatacccttgaacaaatttgattataagaatgttattttgctggtgttattgaaaaagataagaatttaaattatatt 47044843  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 452
Target Start/End: Complemental strand, 7456698 - 7456642
Alignment:
Q  396 ctataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt 452  Q
    |||||| |||||||| | ||| ||||||||  ||||||||||| |||||||||||||    
T  7456698 ctataataatgttatattgttgatgtcattaaaaaagataaaattttatattatatt 7456642  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 21038538 - 21038574
Alignment:
Q  419 tgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||  ||||||||||||||||||||||||||||    
T  21038538 tgtcattagaaaagataaaaatttatattatatttgt 21038574  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 46250971 - 46250891
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||| | || ||||||||  ||||||||||||||| ||| |||| |||  || ||| || ||||||||||||||||||    
T  46250971 tatacccttaaacaaatttgatcataagaatgttattttgttgatgtaattcaaagagaaaagaatttatattatatttgt 46250891  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 50585738 - 50585806
Alignment:
Q  387 taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||||| |||||||| |||||| |||  ||| |||  ||||||||||||||||||||||||||||    
T  50585738 taaatttgacaataagaatattattttgttggtgttattcaaaaagataaaaatttatattatatttgt 50585806  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 28247325 - 28247375
Alignment:
Q  404 atgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 454  Q
    ||||||| ||||| ||||||||| ||| |||||||||||||||||||||||    
T  28247325 atgttatatagttgatgtcattgaaaatgataaaaatttatattatatttg 28247375  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 2594478 - 2594545
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||| |||| |||||||||| | |  |||||||  ||||||||| ||||||||||||||||||    
T  2594478 aaatttgaccataacaatgttattttgctggtgtcattcaaaaagataagaatttatattatatttgt 2594545  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 36643648 - 36643588
Alignment:
Q  395 actataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||||||||||||| |||  | |||||  ||| ||||| ||||||||||||||||||    
T  36643648 actataagaatgttattttgttggtatcattcaaaacgataagaatttatattatatttgt 36643588  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 1284155 - 1284222
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||| |||||||||||||||||| |||  |||||||  |||||||| |||||||| ||||||||||    
T  1284155 aaatttcactataagaatgttattttgttagtgtcattcaaaaagatacaaatttatgttatatttgt 1284222  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 3501464 - 3501394
Alignment:
Q  385 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||||||||||| |||||||||| |||  |||||||  ||| ||||| || |||||||||||||||    
T  3501464 aataaatttgactataaaaatgttattttgttggtgtcattcaaaatgataagaacttatattatatttgt 3501394  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 11420492 - 11420422
Alignment:
Q  385 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||||||||||||||| |||||| |||  |||  ||  ||||||||| ||||||||||||||||||    
T  11420492 aataaatttgactataagaatattattttgttggtgttgttcaaaaagataagaatttatattatatttgt 11420422  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 34151099 - 34151177
Alignment:
Q  375 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    ||||||| | |||| |||||||||||| |||  ||||| |||  |||||||  ||||||||| ||||||||||||||||    
T  34151099 tatacccttaaatagatttgactataataatcctattttgttggtgtcatttaaaaagataagaatttatattatattt 34151177  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 4438535 - 4438600
Alignment:
Q  390 atttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||| ||||||||||||||| | |||  | |||||  ||||||||| ||||||||||||||||||    
T  4438535 atttgtctataagaatgttatattgttggtatcattaaaaaagataagaatttatattatatttgt 4438600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 454
Target Start/End: Original strand, 36067954 - 36068011
Alignment:
Q  397 tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 454  Q
    |||||||||| ||||| |||||||| |||  ||||||||| || ||||||||||||||    
T  36067954 tataagaatgctattttgtttatgttatttaaaaagataagaacttatattatatttg 36068011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 2442259 - 2442311
Alignment:
Q  403 aatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||| | ||| |||| |||  ||||||||||||||||||||||||||||    
T  2442259 aatgttatattgttgatgttattaaaaaagataaaaatttatattatatttgt 2442311  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 8659205 - 8659272
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||| |||| | ||||||||||||||  || ||||| ||| ||||||||||||||||||||||||    
T  8659205 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgt 8659272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 6295119 - 6295051
Alignment:
Q  385 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    |||||||||| ||||||||||||||  |  |||||||||||  ||||||||| ||||||| ||||||||    
T  6295119 aataaatttgtctataagaatgttacattttttatgtcattcaaaaagataagaatttatgttatattt 6295051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 12294446 - 12294512
Alignment:
Q  388 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||| || |||||||||||| |||  |||||||  ||||||||| ||||||||||||||||||    
T  12294446 aaatttgaccatcagaatgttattttgttg-tgtcattttaaaagataagaatttatattatatttgt 12294512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 453
Target Start/End: Original strand, 10427483 - 10427548
Alignment:
Q  387 taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    |||||||||| ||||||||| ||||| ||| ||||||||  |||| |||| ||||||||||||||||    
T  10427483 taaatttgac-ataagaatgctattttgttgatgtcattaaaaaaaataagaatttatattatattt 10427548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 26542695 - 26542732
Alignment:
Q  418 atgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  26542695 atgtcattgaaaaagataaaattttatattatatttgt 26542732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 51229348 - 51229291
Alignment:
Q  397 tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 454  Q
    ||||||||| |||  | ||| ||||||||| ||| |||||||||||||||||||||||    
T  51229348 tataagaattttaaattgttgatgtcattgaaaatgataaaaatttatattatatttg 51229291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 1718337 - 1718305
Alignment:
Q  31 ccatttgcatcttcaaaatcttccttcaaacac 63  Q
    ||||||||||||||||||||||||| |||||||    
T  1718337 ccatttgcatcttcaaaatcttcctccaaacac 1718305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 36564079 - 36564131
Alignment:
Q  401 agaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 453  Q
    |||||||||||| ||| ||||||||  |||| |||| ||||||||||||||||    
T  36564079 agaatgttattttgttgatgtcattaaaaaaaataagaatttatattatattt 36564131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 53728 - 53764
Alignment:
Q  419 tgtcattgcaaaagataaaaatttatattatatttgt 455  Q
    |||||||  ||||||||||||||||||||||||||||    
T  53728 tgtcattaaaaaagataaaaatttatattatatttgt 53764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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