View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17715_low_6 (Length: 558)
Name: NF17715_low_6
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17715_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 90 - 543
Target Start/End: Original strand, 21162922 - 21163373
Alignment:
| Q |
90 |
tatagttcaaaagaatcacagctaaaatcaagctaaaacaccctataagaatttccatatgtcgaaaatcaagctaaaatcttattatgcaactttaatg |
189 |
Q |
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| T |
21162922 |
tatagttcaaaagaatcacagctaaaatcaagctaaaacacccta--agaatttccatatgtcgaaaatcaagctaaaatcttattatgcaactttaatg |
21163019 |
T |
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| Q |
190 |
tttccagaaagtttttcaaccatcaatatgatctcactacacaccttaaacaaatcctaatcaatgctcatgcattaatcaaaccctggtgtaatcttaa |
289 |
Q |
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| T |
21163020 |
tttgcagaaagtttttcaaccatcaatatgatctcactacaaaccttaaacaaatcctaatcaatgctcatgccttaatcaaaccctggtgtaatcttaa |
21163119 |
T |
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| Q |
290 |
ttctaccaacacatccttcacttacattttccataagtcaaaattaattcttccattaannnnnnnnnnnnaaataaacttcatagatgaacttgagatt |
389 |
Q |
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| T |
21163120 |
ttctaccaacacattcttcacttacattttccataagtcaaaattaattcttctattaatttttcttttttaaataaacttcatagaggaacttgagatt |
21163219 |
T |
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| Q |
390 |
gttgttgtgtccatatcataaacgtgcatcaaagagttttccacgaaatagtggtgatattacattttaccctttggtagtggtggataaaaggcaaaga |
489 |
Q |
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| T |
21163220 |
gttgttgtgtccatatcataaacgtgcatcaaagagttttccccgaaatagtggtgatattacattttaccctttggtagtggtggataaaaggcaaaga |
21163319 |
T |
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| Q |
490 |
aaatgctctttgtcccttatattttacaatattattttattctctttcaacttt |
543 |
Q |
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| T |
21163320 |
aaatgctctttgtcccttatattttacaatattattttattctctttcaacttt |
21163373 |
T |
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