View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17715_low_7 (Length: 474)

Name: NF17715_low_7
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17715_low_7
NF17715_low_7
[»] chr7 (2 HSPs)
chr7 (18-459)||(16771622-16772063)
chr7 (262-340)||(27151998-27152076)
[»] chr3 (8 HSPs)
chr3 (252-341)||(15478570-15478659)
chr3 (180-281)||(24729710-24729811)
chr3 (249-348)||(3661504-3661602)
chr3 (244-337)||(38649063-38649156)
chr3 (250-337)||(26434585-26434672)
chr3 (250-341)||(23422570-23422661)
chr3 (286-337)||(53610226-53610277)
chr3 (264-337)||(11895321-11895394)
[»] chr8 (4 HSPs)
chr8 (249-348)||(26710599-26710697)
chr8 (264-337)||(23134486-23134559)
chr8 (286-337)||(38346643-38346694)
chr8 (109-185)||(26971777-26971853)
[»] chr2 (4 HSPs)
chr2 (249-348)||(39010690-39010788)
chr2 (256-337)||(42405113-42405194)
chr2 (250-337)||(14655567-14655654)
chr2 (253-337)||(35137106-35137190)
[»] chr6 (2 HSPs)
chr6 (244-355)||(24895723-24895832)
chr6 (271-348)||(13028944-13029020)
[»] chr4 (2 HSPs)
chr4 (73-335)||(7589342-7589604)
chr4 (253-335)||(46786368-46786450)
[»] chr1 (3 HSPs)
chr1 (253-313)||(5194945-5195005)
chr1 (253-337)||(50238449-50238533)
chr1 (264-337)||(20283022-20283095)
[»] scaffold0214 (1 HSPs)
scaffold0214 (253-335)||(7136-7218)
[»] chr5 (2 HSPs)
chr5 (262-337)||(7811997-7812072)
chr5 (289-337)||(23943234-23943282)


Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 16771622 - 16772063
Alignment:
Q  18 gatatcattgttacggtttatggtgaaggtaatggagtaccggttagagtctaggacagaagaggtattggtactagcagtgtgcatcaaaagccaaatg 117  Q
    |||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16771622 gataacattattacggtttatggtgaaggtgatggagtactggttagagtctaggacagaagaggtattggtactagcagtgtgcatcaaaagccaaatg 16771721  T
Q  118 ccttctgagtgaccgttggcttcaataacatgaataggggtgtaaccattattaatccaaaaagaggaaaggttagaaaaaggagtgtgagtttcgaata 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16771722 cctcctgagtgaccgttggcttcaataacatgaataggggtgtaaccattgttaatccaaaaagaggaaaggttagcaaaaggagtgtgagtttcgaata 16771821  T
Q  218 tggcaaagtaagtaggactatacttccttattaaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16771822 tggcaaagtaagtaggactatacttccttattaaatctttcagctgtcttcttgcattattattgtgtgcccctatgatattccaagagaggattgaagt 16771921  T
Q  318 atctaagagagcttccataataaataatgaaagattgaatgtatgtcaggnnnnnnnctaggtgaccatatcctccttgcagtcattggaggcttcatgg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||||    
T  16771922 atctaagagagcttccataataaataatgaaagattgaatgtatgtcaggaaaaaaactaggtgaccatatcctccttgcaatcattggaggcttcatgg 16772021  T
Q  418 tgtccttcatttgctgttaaattcacttggattgtctctgtg 459  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16772022 tgtccttcatttgctgttaaattcacttggattgtctctgtg 16772063  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 27152076 - 27151998
Alignment:
Q  262 tgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataataa 340  Q
    |||||||| |||||||| |||| ||||||||||| ||||||||||||| |||||||||| || |  |||||||||||||    
T  27152076 tgtcttctggcattattgttgtttgcccctctgacattccaagagaggtttgaagtatcaaataaggcttccataataa 27151998  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 341
Target Start/End: Original strand, 15478570 - 15478659
Alignment:
Q  252 atctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataataaa 341  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||| ||||||  ||||| |||||||||||    
T  15478570 atctttcagttgtcttctagcattgttattgtatgcccctctgatgttccaagagaggattgaaatatctatcagagcatccataataaa 15478659  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 24729811 - 24729710
Alignment:
Q  180 agaggaaaggttagaaaaaggagtgtgagtttcgaatatggcaaagtaagtaggactatacttccttattaaatctttcagttgtcttcttgcattatta 279  Q
    |||||||||||||| ||||||||||||||| || || ||||| |||||  | ||  |||||||||||||||||||||| ||||||| |||||||||||||    
T  24729811 agaggaaaggttagcaaaaggagtgtgagtctcaaaaatggctaagtatttggggttatacttccttattaaatcttttagttgtcgtcttgcattatta 24729712  T
Q  280 tt 281  Q
    ||    
T  24729711 tt 24729710  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 3661504 - 3661602
Alignment:
Q  249 taaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataataaataatgaa 348  Q
    ||||||||| || |||||||  |||||||| || |||||||||||||||||||||||||||||||||  |||||  ||||||||||||| ||||||||||    
T  3661504 taaatctttaagctgtcttcgagcattattgttttgtgcccctctgatattccaagagaggattgaaacatctagtagagcttccataa-aaataatgaa 3661602  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 38649063 - 38649156
Alignment:
Q  244 cttattaaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    ||||| ||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||| || || ||||||||||    
T  38649063 cttatcaaatccttcagatgtcttctggcattgttattgtgagcccctctgatatttcaagagaggattgatgtatcgaaaagggcttccataa 38649156  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 26434585 - 26434672
Alignment:
Q  250 aaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||||||| || | |||||| ||||| |||||||| |||||||| ||||||||||||||||| | | |||||| ||| ||||||||||    
T  26434585 aaatctttaaggtttcttctagcattgttattgtgagcccctctaatattccaagagaggatggtaatatctaggagtgcttccataa 26434672  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 23422661 - 23422570
Alignment:
Q  250 aaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataataaa 341  Q
    ||||||||||  |||||||||| ||||||| || |||||||||| ||  ||||||||||||  | |||||| || ||||||||||| |||||    
T  23422661 aaatctttcaagtgtcttcttgaattattactgagtgcccctcttatggtccaagagaggaaagtagtatcaaaaagagcttccatgataaa 23422570  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 53610226 - 53610277
Alignment:
Q  286 gcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    ||||||||||||||||||||||| ||||||||||||  || |||||||||||    
T  53610226 gcccctctgatattccaagagagaattgaagtatctttgaaagcttccataa 53610277  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 11895394 - 11895321
Alignment:
Q  264 tcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    ||||||| |||| ||||| || |||||||| ||||||||||||||||| |   |||| | ||||||||||||||    
T  11895394 tcttcttccattgttattttgagcccctctaatattccaagagaggatggtgatatcaaggagagcttccataa 11895321  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 26710599 - 26710697
Alignment:
Q  249 taaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataataaataatgaa 348  Q
    |||||||||||| || |||||||||||||| || || |||||||| |||||||||||| ||||||||||||| |  ||||||||||||| ||||||||||    
T  26710599 taaatctttcagctgccttcttgcattattgttttgagcccctctaatattccaagagtggattgaagtatcgagaagagcttccataa-aaataatgaa 26710697  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 23134486 - 23134559
Alignment:
Q  264 tcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| |   |||| | ||||||||||||||    
T  23134486 tcttcttgcattgttattttgagcccctctaatattccaagagaggatggtgatatcaaggagagcttccataa 23134559  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 38346694 - 38346643
Alignment:
Q  286 gcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||||||| |||||||||||||||||||  |||| || ||||||||||||||    
T  38346694 gcccctctaatattccaagagaggattgttgtatttaggagagcttccataa 38346643  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 26971853 - 26971777
Alignment:
Q  109 agccaaatgccttctgagtgaccgttggcttcaataacatgaataggggtgtaaccattattaatccaaaaagagga 185  Q
    |||||||| ||| | ||||| || ||||||||||| | |||||| || || |||||||||||  |||||||||||||    
T  26971853 agccaaatacctccagagtggccattggcttcaatgatatgaattggtgtataaccattattcgtccaaaaagagga 26971777  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 348
Target Start/End: Complemental strand, 39010788 - 39010690
Alignment:
Q  249 taaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataataaataatgaa 348  Q
    ||||||||| || |||||||  |||||||| || |||||||||||||||||||||||||||||||||  |||||  ||||||||||||| ||||||||||    
T  39010788 taaatctttaagctgtcttcgagcattattgttttgtgcccctctgatattccaagagaggattgaaacatctagtagagcttccataa-aaataatgaa 39010690  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 42405113 - 42405194
Alignment:
Q  256 ttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||| ||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||| ||||||  ||||| |||||||    
T  42405113 ttcaattgtcttctagcattgttattgtatgcccctctgatgttccaagagaggattgaaatatctatcagagcatccataa 42405194  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 14655567 - 14655654
Alignment:
Q  250 aaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||||||| || | |||||||||||| |||||||| |||||||| ||||||||||||||||| | | |||| | ||||||||||||||    
T  14655567 aaatctttaaggtttcttcttgcattgttattgtgagcccctctaatattccaagagaggatggtaatatcaaggagagcttccataa 14655654  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 35137106 - 35137190
Alignment:
Q  253 tctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||||||| |||||| |||||||| ||||  | |||||||| ||||||||||||||||| ||  ||||||  |||||||||||||    
T  35137106 tctttcagatgtctttttgcattaatatttagagcccctctaatattccaagagaggatagagatatctagaagagcttccataa 35137190  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 244 - 355
Target Start/End: Original strand, 24895723 - 24895832
Alignment:
Q  244 cttattaaatctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataataaata 343  Q
    ||||| ||||||||||  |||||||||| ||||||| || |||||||||| || ||||||||||||| || |||||| || ||||||||||| |||||||    
T  24895723 cttatcaaatctttcaagtgtcttcttgaattattactgagtgcccctcttatgttccaagagaggaatgtagtatcaaaaagagcttccatgataaata 24895822  T
Q  344 atgaaagattga 355  Q
      ||||||||||    
T  24895823 --gaaagattga 24895832  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 13028944 - 13029020
Alignment:
Q  271 gcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataataaataatgaa 348  Q
    |||||||| || |||||||||||||||||||||||||||||||||  |||||  || |||||||||| ||||||||||    
T  13028944 gcattattgttttgtgcccctctgatattccaagagaggattgaaacatctagaagtgcttccataa-aaataatgaa 13029020  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 335
Target Start/End: Original strand, 7589342 - 7589604
Alignment:
Q  73 acagaagaggtattggtactagcagtgtgcatcaaaagccaaatgccttctgagtgaccgttggcttcaataacatgaataggggtgtaaccattattaa 172  Q
    |||||||||||| | |||  ||| | ||| |||| |||||| || ||| | ||||| || || |||||||| | ||||| ||| ||||||| |||||||     
T  7589342 acagaagaggtagttgtagaagctgagtgtatcagaagccagatacctcccgagtggccatttgcttcaatgatatgaacaggagtgtaactattattat 7589441  T
Q  173 tccaaaaagaggaaaggttagaaaaaggagtgtgagtttcgaatatggcaaagtaagtaggactatacttccttattaaatctttcagttgtcttcttgc 272  Q
    |||| || || |||   |||| | |||||| ||| |||||  | || || |||||| | |||  |||||| || | |||||||||||| || ||||||||    
T  7589442 tccagaatgaagaactcttagtataaggagagtgggtttcatagatagctaagtaattgggatgatactttctcagtaaatctttcagctgccttcttgc 7589541  T
Q  273 attattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccat 335  Q
    |||||| || || |||||||| |||||||||||||||| |||| |||  |  |||||||||||    
T  7589542 attattgttttgagcccctctaatattccaagagaggagtgaaatattgagtagagcttccat 7589604  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 46786368 - 46786450
Alignment:
Q  253 tctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccat 335  Q
    ||||||||||||||| | || ||| | || || |||||||| || |||||||||||||| | |||||||| ||| ||||||||    
T  46786368 tctttcagttgtcttttagctttactgttttgggcccctctaatgttccaagagaggatagtagtatctaggagtgcttccat 46786450  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 5194945 - 5195005
Alignment:
Q  253 tctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattg 313  Q
    |||||||| |||||||| || || |||||||| ||||||||||||||||||||||||||||    
T  5194945 tctttcaggtgtcttctagctttgttattgtgagcccctctgatattccaagagaggattg 5195005  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 50238449 - 50238533
Alignment:
Q  253 tctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||||||  |||||||| | ||| ||||| || ||||||||||| |||||||||||||| |||||||||| |||||| |||||||    
T  50238449 tctttcatatgtcttctggaattgttattatgagcccctctgatgttccaagagaggatagaagtatctaggagagcatccataa 50238533  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 20283095 - 20283022
Alignment:
Q  264 tcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    ||||||| |||| ||||| || |||||||| ||||||||||||||||| |   |||| | ||||||||||||||    
T  20283095 tcttcttccattgttattttgagcccctctaatattccaagagaggatggtgatatcaaggagagcttccataa 20283022  T

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Target: scaffold0214 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 7218 - 7136
Alignment:
Q  253 tctttcagttgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccat 335  Q
    |||||||| |||||||| |  ||| ||||||| |||||||||||||||||||||||||||||  | || | ||||||||||||    
T  7218 tctttcagatgtcttctagagttactattgtgagcccctctgatattccaagagaggattgagatgtcaaggagagcttccat 7136  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 7812072 - 7811997
Alignment:
Q  262 tgtcttcttgcattattattgtgtgcccctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||||||| ||||||| ||| || |||||||| || |||||||||||||| ||| |||||| ||| ||||||||||    
T  7812072 tgtcttctagcattatgattttgagcccctctaatgttccaagagaggatggaaatatctaggagcgcttccataa 7811997  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 23943282 - 23943234
Alignment:
Q  289 cctctgatattccaagagaggattgaagtatctaagagagcttccataa 337  Q
    |||||||||||||| ||||| ||||||||||||  || |||||||||||    
T  23943282 cctctgatattccaggagagaattgaagtatctttgaaagcttccataa 23943234  T

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