View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17715_low_8 (Length: 448)
Name: NF17715_low_8
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17715_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 104 - 424
Target Start/End: Original strand, 31795697 - 31796017
Alignment:
| Q |
104 |
acactttgtataatcttgattgtatcaacacatccttgaattgaaaatacaaaagccaaaattgattcttccatccattttctccagcccaaacttcaca |
203 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31795697 |
acaccttgtgtaatcttgattgtatcaacacatccttgagttgaaaatacaaaagccaaaattgattcttccatccattttctccaacccaaacttcaca |
31795796 |
T |
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| Q |
204 |
gcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaaaatcacataatgccacagccacgtaagataaaaagaattcttat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31795797 |
gcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaaaatcacataatgctacagccacgtaagataaaaagaattcttat |
31795896 |
T |
|
| Q |
304 |
acctggtccaaaccaaaagctctggtagtcattattggaagaaaaaacactggcatagagaaaataaaggaacacaattaataatacatacaaacataac |
403 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31795897 |
acctggtccaaaccaaaagctctgatagtcattattggaagaaaaaacactgacatagagaaaataaaggaacacaattaataatacatacaaacataac |
31795996 |
T |
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| Q |
404 |
gtggaaactttgaaattggag |
424 |
Q |
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||| ||||||||||||||||| |
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| T |
31795997 |
gtgaaaactttgaaattggag |
31796017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 31795559 - 31795666
Alignment:
| Q |
7 |
tccaagaatattcgtatgtcgaaaattaggcgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacaca |
106 |
Q |
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| T |
31795559 |
tccaagaatattcgtatgtcgaaaatcagacgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacaca |
31795658 |
T |
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| Q |
107 |
ctttgtat |
114 |
Q |
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|||||||| |
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| T |
31795659 |
ctttgtat |
31795666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 22189810 - 22189869
Alignment:
| Q |
52 |
gcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactttg |
111 |
Q |
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||||||| |||||||||| ||||||||||||||| | | ||||| ||| ||||||||||| |
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| T |
22189810 |
gcaacttccatgttgacaggaagctcttcaaccatcaacataatatcataacacactttg |
22189869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 24307478 - 24307374
Alignment:
| Q |
160 |
caaaattgattcttccatccattttctccagcccaaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaa |
259 |
Q |
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| T |
24307478 |
caaaattgatttttccatcaattttctcaagcccaaactttttagcggaacttttgactgcaacactttcatagtaccacccttctcatttgatgtggaa |
24307379 |
T |
|
| Q |
260 |
aatca |
264 |
Q |
| |
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|||| |
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|
| T |
24307378 |
gatca |
24307374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 1604845 - 1604975
Alignment:
| Q |
110 |
tgtataatcttgattgtatcaacacatccttgaattgaaa-atacaaaagccaaaattgattcttccatccattttctccagcccaaacttcacagcgga |
208 |
Q |
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||||||||||||||||||| ||| | ||||||| |||||| | || ||| ||||||| |||||||| || ||||||| ||||||||||||| |||| | |
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| T |
1604845 |
tgtataatcttgattgtattaacccgtccttgacttgaaatttccacaagtcaaaattcattcttccttcaattttctatagcccaaacttcatagcgaa |
1604944 |
T |
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| Q |
209 |
gcttatgattgcaacactttcacaataccac |
239 |
Q |
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| | ||||||||||||||| | |||||| |
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| T |
1604945 |
agtagtaattgcaacactttcatagtaccac |
1604975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 4034177 - 4034238
Alignment:
| Q |
40 |
aaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcaca |
101 |
Q |
| |
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||||||| ||||||| ||| ||||||| | ||| |||||||||||||||||||||||||| |
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| T |
4034177 |
aaaacttatggtgcagcttccatgttggtagaaagttcttcaaccaccgatataatctcaca |
4034238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 52733453 - 52733358
Alignment:
| Q |
153 |
caaaagccaaaattgattcttccatccattttctcca-gcccaaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttt |
247 |
Q |
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|||||| |||||||||| |||||||| |||||||| | ||| ||||||||| | || ||||||||||||||||||| | |||||||| ||||||| |
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| T |
52733453 |
caaaaggcaaaattgatgcttccatcaattttctctaagcctaaacttcacggtagaacttatgattgcaacacttttataataccacacttcttt |
52733358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 4529275 - 4529149
Alignment:
| Q |
109 |
ttgtataatcttgattgtatcaacacatccttgaattgaaaat---acaaaagccaaaattgattcttccatccattttctccagcccaaacttcacagc |
205 |
Q |
| |
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|||||||||| |||||| ||| | |||||| ||| ||||||| ||| ||| ||||||||||||||||| | |||||||| |||||||| |||| | |
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| T |
4529275 |
ttgtataatcgtgattggatcgaaacatccatgacttgaaaactccacacaaggcaaaattgattcttccaccaattttctctagcccaaatttcaatac |
4529176 |
T |
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| Q |
206 |
ggagcttatgattgcaacactttcaca |
232 |
Q |
| |
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| ||| ||||||||||||||||||| |
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| T |
4529175 |
aaaacttgtgattgcaacactttcaca |
4529149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 7371329 - 7371259
Alignment:
| Q |
189 |
agcccaaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaa |
259 |
Q |
| |
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||||||||| ||| |||||| ||||| ||||||| |||||||| || |||||||||||| |||||||||| |
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| T |
7371329 |
agcccaaacatcatagcggaatttatggttgcaacgctttcacattatcacccttcttttctgatgtggaa |
7371259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 10149959 - 10149858
Alignment:
| Q |
10 |
aagaatattcgtatgtcgaaaattaggcgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactt |
109 |
Q |
| |
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|||||| ||| | |||||||||| ||| ||||||||| |||| |||||| |||| | | |||| |||||||||||||| ||||||||| |||||| || |
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| T |
10149959 |
aagaattttcatgtgtcgaaaatcaggtgaaaaacttatggtacaacttttatgtgggccggaagttcttcaaccaccgacataatctcataacacaatt |
10149860 |
T |
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| Q |
110 |
tg |
111 |
Q |
| |
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|| |
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|
| T |
10149859 |
tg |
10149858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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