View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17715_low_9 (Length: 431)
Name: NF17715_low_9
Description: NF17715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17715_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Complemental strand, 42362220 - 42361806
Alignment:
| Q |
7 |
aaaataaagtattttacatcagaaaattactacttctaaaacactgtctttaaggcaacgtttacaagttttagcagtttattgtagctagtctcacctc |
106 |
Q |
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| T |
42362220 |
aaaataaagtattttacattagaaaattactacttctaaaaca--gtctttaaggcaacgtttacaagttttagcagtttattgtagctagtctcacctc |
42362123 |
T |
|
| Q |
107 |
agttttttaaattcttctgtcaacaatttaggagtggggatattatcaaacacaggaagaagtattactcttggcactaacttctcttgggattaaagtc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42362122 |
agttttttaaattcttctgtcaacaatttaggagtggggatattatcaaacacaggaagaagtattactcttggcactaacttttcttgggattaaagtc |
42362023 |
T |
|
| Q |
207 |
cttgaaactttaggaataaacaaaataactaggggcagcaaaactaatgtacaaggaaaagggaaacagggttaagctgttcacctttatttcaattcag |
306 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42362022 |
cttgaaacatagggaataaacaaaataactaggggcagcaaaactaatgtacaaggaaaagggaaacagggttaagctgttcacctttatttcaattcag |
42361923 |
T |
|
| Q |
307 |
attttacagaagaaaccttttttcgtttgccagtgaagttctcacttgaaacagttaaaagcttattgatagacatttgttccccccttaaatccttctt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361922 |
attttacagaagaaaccttttttcgtttgccagtgaagttctcacttgaaacagttaaaagcttattgatagacatttgttccccccttaaatccttctt |
42361823 |
T |
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| Q |
407 |
tatttcatacctatgct |
423 |
Q |
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||||||||||||||||| |
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| T |
42361822 |
tatttcatacctatgct |
42361806 |
T |
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