View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_11 (Length: 521)
Name: NF17716_high_11
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 36490410 - 36489924
Alignment:
| Q |
18 |
attactgagttcaaagaaatagatccttgtgattttgtattaatagttagtcatacaaattaattgaaaaatcatgtgtgagtataggttataaattgca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36490410 |
attactgagttcaaagaaatagatccttgtgattttgtattaatagttagtcatacaaattaattgaaaaatcatgtgtgagta--ggttataaattgca |
36490313 |
T |
|
| Q |
118 |
tgaaggaaggaagaaagaaatgcagacagaacagaacacacataaagaaactccattgtctgttggagaaaggttcgaaaaacttcgagcaaatcaatat |
217 |
Q |
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| T |
36490312 |
tgaaggaaggaagaaagaaatgcagacagaacagaacacacataaagaaactccattgtctgttggagaaaggttcgaaaaacttcgagcaaatcaatat |
36490213 |
T |
|
| Q |
218 |
atgcgcatccttctcttgtttagtaattttattccactgtgacttggatctccacttatctgataatgtgttattaactttttctttacttaaaattctc |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36490212 |
atgcgcatccttcttttgtttagtaattttattccactgtgacttggatctccacttatccgataatgtgttattaactttttctttacttaaaattctc |
36490113 |
T |
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| Q |
318 |
acagtcctgatgatcgaggaactaataa---ttttatttttatctacattggatatttttaattaaatgttcagtcccataaaactgtagaaaagtgtag |
414 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36490112 |
acagtcctgatgatcgaggaactaataatatttttttttttatctacattggatatttttaattaaatgttcagtcccataaaactgtagaaaagtgtag |
36490013 |
T |
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| Q |
415 |
cacaaagagaaagaacattgcagatatatcaccttcatattaattatatatctaactatcaaatatgtcacccttgccttttcccgcct |
503 |
Q |
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| T |
36490012 |
cacaaagagatagaacattgcagatatatcaccttcatattaattatatatctaactatcaaatatgtcacccttgccttttcccgcct |
36489924 |
T |
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