View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_16 (Length: 482)
Name: NF17716_high_16
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 48166751 - 48166287
Alignment:
| Q |
1 |
atagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagca |
100 |
Q |
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| T |
48166751 |
atagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagta |
48166652 |
T |
|
| Q |
101 |
agtcatgttcagcctagcaaagtttaacctagtctattttcacctatgttatgtagcactgacaaattcgattgaaagcgtgtgtagtatcagactcgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
48166651 |
agtcatgttcagcctagcaaagtttaacctagtctattttcacctttgttatgtagcaccggaaaattcgattgaaagcgtgtgtagtatcagactcgtg |
48166552 |
T |
|
| Q |
201 |
tcaggatctgatgccaacacatatattatattcaattactcagttttctcaaattattaccagtggagacatattagtgtcgtgtccagtgtccctattt |
300 |
Q |
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||||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48166551 |
tcaggatgtgataccaacacatatattatattcaattattcacttttctcaaattattaccagtggagacatattagtgtcgtgtccagtgtccctattt |
48166452 |
T |
|
| Q |
301 |
gtgtcagtagttcatagactctcacccttaagtgtgatttataacattggtatagtaatcttactctttttatgtaccgcaggaggtggcaagcagcgca |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||||| |
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| T |
48166451 |
gtgtcagtagttcatagactctcacccctaagtgtgatttataacattggtataataatcttactcttgttatgtactgctggaggtggcaagcagcgca |
48166352 |
T |
|
| Q |
401 |
agaatttgtcagcaaggaaaggatcatttggttgttcaaatgcaacagcaacaagagctgctact |
465 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48166351 |
agaatttgtcagcaaggaaaggatcatttggttgttcaaatgcaacagcaacaagagctgctact |
48166287 |
T |
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