View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_18 (Length: 472)
Name: NF17716_high_18
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 105 - 460
Target Start/End: Original strand, 6034217 - 6034577
Alignment:
| Q |
105 |
aagaagctaatagattatattaataactgctaactatgcacaagttgaacatggagttcctcgaaaagcaatagaaccaagttacaaaataataacaaga |
204 |
Q |
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| T |
6034217 |
aagaagctaatagattatattaataactgctaactatgcacaagttgaacatggagttcctcgaaaagcaatagaaccaagttacaaaataataacaaga |
6034316 |
T |
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| Q |
205 |
aaaccctacaatacgatattgatgtatagtgaagtccttaatattattgagattacatctctttgaatacaattgtacataagtagtttacaaatattga |
304 |
Q |
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| T |
6034317 |
aaaccctacaatacgatattgatgtatagtgaagtccttaatattattgacattacatctctttgaatacaattgtacataagtagtttacaaatattga |
6034416 |
T |
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| Q |
305 |
tgtatagtgatgtaccttcaa------gatgacaacctctttatattataggttcgattcctttaaagtaaataggtcttctggttgagactaattctaa |
398 |
Q |
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| T |
6034417 |
tgtatagtgatgtaccttcaatatgctgatgacaacctctttatattataggttcgattcctttaaagtaaataggtcttc-ggttgagactaattctaa |
6034515 |
T |
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| Q |
399 |
gagaatgtctacttggaaacctttgttggataattaggtaacacttttaagctcgtcgagta |
460 |
Q |
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| T |
6034516 |
gagaatgtctacttggaaacctttgttggataactaggtaacacttttaagctcgtcgagta |
6034577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 5219217 - 5219258
Alignment:
| Q |
389 |
ctaattctaagagaatgtctacttggaaacctttgttggata |
430 |
Q |
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| T |
5219217 |
ctaattctaagagattgtctacttggcagcctttgttggata |
5219258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 16573919 - 16573960
Alignment:
| Q |
389 |
ctaattctaagagaatgtctacttggaaacctttgttggata |
430 |
Q |
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| T |
16573919 |
ctaattctaagagattgtctacttggtagcctttgttggata |
16573960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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