View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_high_21 (Length: 463)

Name: NF17716_high_21
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_high_21
NF17716_high_21
[»] chr6 (11 HSPs)
chr6 (1-262)||(12949462-12949722)
chr6 (4-272)||(12908036-12908305)
chr6 (4-272)||(12933125-12933394)
chr6 (1-175)||(18555927-18556102)
chr6 (8-175)||(12958928-12959096)
chr6 (204-277)||(12900549-12900622)
chr6 (382-446)||(12908409-12908473)
chr6 (382-446)||(12933488-12933552)
chr6 (40-87)||(12900431-12900478)
chr6 (382-447)||(12949853-12949916)
chr6 (118-182)||(12900482-12900546)
[»] chr2 (2 HSPs)
chr2 (1-262)||(17922500-17922763)
chr2 (382-447)||(17922308-17922371)
[»] chr5 (7 HSPs)
chr5 (3-128)||(10612576-10612698)
chr5 (10-86)||(10716248-10716324)
chr5 (6-122)||(10565870-10565985)
chr5 (3-58)||(10746321-10746376)
chr5 (244-293)||(10761940-10761989)
chr5 (6-122)||(10581862-10581977)
chr5 (248-291)||(10605805-10605848)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 12949462 - 12949722
Alignment:
Q  1 tcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaacta 100  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  12949462 tcttatatgcttatttgaatcataaccaactcattaattgcttatgaaattagaattttatttttatcatcttattgtgcatttcaaaattcctagacta 12949561  T
Q  101 caaaagataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtcatttgtggaaagagaagttatgcgacataatgta 200  Q
    ||||| ||||||||| ||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  12949562 caaaatataatggtaataatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcataatgta 12949661  T
Q  201 ctttggttaagaaaatgaatggtcagctggaatcacatgttgaaatgcttagtttactagtt 262  Q
    || | | ||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  12949662 ctct-gctaagaaaatgaatggtcagctggaatcacatgtggcaatgcttagtatactagtt 12949722  T

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Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 12908036 - 12908305
Alignment:
Q  4 tatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactacaa 103  Q
    ||||| |||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||    
T  12908036 tatatctttattagaatcataactacgtcattaattgcttatggaattagagttttatttttatcatcttattttgtatttcaaaattcccaaactacaa 12908135  T
Q  104 aagataatggtattaatggccttctgtattttaatttca-ggtcatgaacaaaatttctaagtcatttgtggaaagagaagttatgcgacataatgtact 202  Q
    || ||||||||| ||||| ||||||  |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||  ||||| |||||    
T  12908136 aatataatggtaataatgaccttcttgattttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaagatatgcagcataacgtact 12908235  T
Q  203 ttggttaagaaaatgaatggtcagctggaatcacatgttgaaatgcttagtttactagtttgttattctc 272  Q
    ||||||||||||||||||| |||||| ||||||||||| |  || ||| |||||||||||| ||||||||    
T  12908236 ttggttaagaaaatgaatgttcagcttgaatcacatgtcgctatactttgtttactagttttttattctc 12908305  T

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Target: chr6; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 12933125 - 12933394
Alignment:
Q  4 tatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactacaa 103  Q
    ||||| |||||| ||||||||||||  |||||||||||||| ||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||    
T  12933125 tatatctttattagaatcataactacgtcattaattgcttaaggaattagagttttatttttatcatcttattttgtatttcaaaattcccaaactacaa 12933224  T
Q  104 aagataatggtattaatggccttctgtattttaatttca-ggtcatgaacaaaatttctaagtcatttgtggaaagagaagttatgcgacataatgtact 202  Q
    || ||||||||| ||||| ||||||  |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||  ||||| |||||    
T  12933225 aatataatggtaataatgaccttcttgattttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaagatatgcagcataacgtact 12933324  T
Q  203 ttggttaagaaaatgaatggtcagctggaatcacatgttgaaatgcttagtttactagtttgttattctc 272  Q
    ||||||||||||||||||| |||||| ||||||||||| |  || ||| |||||||||||| ||||||||    
T  12933325 ttggttaagaaaatgaatgttcagcttgaatcacatgtcgctatactttgtttactagttttttattctc 12933394  T

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Target: chr6; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 18555927 - 18556102
Alignment:
Q  1 tcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaacta 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18555927 tcttataagtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaacta 18556026  T
Q  101 caaaagataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtc-atttgtgga 175  Q
    ||||| ||||||||| ||||  ||||||  |||||||||||||||  ||||||| ||||||||||| |||||||||    
T  18556027 caaaatataatggtaataattaccttcttgattttaatttcaggttttgaacaatatttctaagtcaatttgtgga 18556102  T

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Target: chr6; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 12958928 - 12959096
Alignment:
Q  8 tgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactacaaaaga 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  12958928 tgtttatttgaatcataactaactcattaattggttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactataaaata 12959027  T
Q  108 taatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtc-atttgtgga 175  Q
    |||||||| ||||| ||||||  |||||||||||||||  ||||||||||||||||||| |||||||||    
T  12959028 taatggtaataatgaccttcttgattttaatttcaggttttgaacaaaatttctaagtcaatttgtgga 12959096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 12900549 - 12900622
Alignment:
Q  204 tggttaagaaaatgaatggtcagctggaatcacatgttgaaatgcttagtttactagtttgttattctctaaat 277  Q
    ||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  12900549 tggttaagaaaatgaatggtccgctggaatcacatgcggcaatgcttagtttactagtttgttattctctaaat 12900622  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 12908409 - 12908473
Alignment:
Q  382 tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcccaaataaaa 446  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  12908409 tcaaatctttattaaaatatgtgttcaattcctaagtatcttaaactttgtttgcccaaataaaa 12908473  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 12933488 - 12933552
Alignment:
Q  382 tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcccaaataaaa 446  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  12933488 tcaaatctttattaaaatatgtgttcaattcctaagtatcttaaactttgtttgcccaaataaaa 12933552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 12900431 - 12900478
Alignment:
Q  40 gcttatggaattagaattttatttttatcatcttattgtgcatttcaa 87  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  12900431 gcttatggaattagaattttatttttatcatcttgttgtgcatttcaa 12900478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 12949853 - 12949916
Alignment:
Q  382 tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcccaaataaaac 447  Q
    ||||||||||||||||  ||||||||||||| |||| || ||||||||||||||||||||||||||    
T  12949853 tcaaatctttattaaa--atgtgtttaattcataagtatattaaactttgtttgcccaaataaaac 12949916  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 12900482 - 12900546
Alignment:
Q  118 aatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtcatttgtggaaagagaa 182  Q
    |||| ||||||  |||||||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  12900482 aatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcgtttgtgcaaagagaa 12900546  T

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Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 17922763 - 17922500
Alignment:
Q  1 tcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgt---gcatttcaaaattcccaaa 97  Q
    ||||||| ||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||   |||||||||||||||||||    
T  17922763 tcttataagtttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgttgtgcatttcaaaattcccaaa 17922664  T
Q  98 ctacaaaagataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtcatttgtggaaagagaagttatgcgacataat 197  Q
    |||||||| ||||||||| ||||  ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  17922663 ctacaaaatataatggtaataataaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcataat 17922564  T
Q  198 gtactttggttaagaaaatgaatggtcagctggaatcacatgttgaaatgcttagtttactagtt 262  Q
    ||||||| | ||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  17922563 gtacttt-gctaagaaaatgaatggtcagctggaatcacatgtggcaatgcttagtatactagtt 17922500  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 447
Target Start/End: Complemental strand, 17922371 - 17922308
Alignment:
Q  382 tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcccaaataaaac 447  Q
    ||||||||||||||||  ||||||||||||| |||| || ||||||||||||||||||||||||||    
T  17922371 tcaaatctttattaaa--atgtgtttaattcataagtatattaaactttgtttgcccaaataaaac 17922308  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 10612576 - 10612698
Alignment:
Q  3 ttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactaca 102  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||| |   ||||| ||||||||||||||||||||||||||||| |||| ||||| ||    
T  10612576 ttatatatttatttgaatcataactaactcaataattgtttatggact---aatttgatttttatcatcttattgtgcatttcaaatttcctaaacttca 10612672  T
Q  103 aaagataatggtattaatggccttct 128  Q
    ||| ||||| ||| ||||||||||||    
T  10612673 aaatataatagtaataatggccttct 10612698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 10716324 - 10716248
Alignment:
Q  10 tttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttca 86  Q
    ||||||||||| |||||||||||  |||||||||||||||||| ||||| || ||||||||||||||||||||||||    
T  10716324 tttatttgaataataactaactctataattgcttatggaattataatttgatctttatcatcttattgtgcatttca 10716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 10565870 - 10565985
Alignment:
Q  6 tatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactacaaaa 105  Q
    ||||| |||| ||||||||||||| |||||| ||| ||||||| |||  |||| |||||||| ||| |||| ||||||| |||||||| |||||||||||    
T  10565870 tatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttgcattt-aaaattcctaaactacaaaa 10565968  T
Q  106 gataatggtattaatgg 122  Q
     | ||||||| ||||||    
T  10565969 tacaatggtaataatgg 10565985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 10746376 - 10746321
Alignment:
Q  3 ttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattt 58  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  10746376 ttatatgcttatttgaatcataactaactcattaattgcttatgcaattataattt 10746321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 10761989 - 10761940
Alignment:
Q  244 aatgcttagtttactagtttgttattctctaaattctggtagaaacattt 293  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  10761989 aatgcttagtttactagtttgttattcacttaattctggtagaaacattt 10761940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 10581862 - 10581977
Alignment:
Q  6 tatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactacaaaa 105  Q
    ||||| |||| ||||||||||||| |||||| ||| ||||||| |||  |||| |||||||| ||| |||| ||||||| || ||||| ||||| |||||    
T  10581862 tatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttgcattt-aatattcctaaacttcaaaa 10581960  T
Q  106 gataatggtattaatgg 122  Q
     | ||||||| ||||||    
T  10581961 tacaatggtaataatgg 10581977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 10605805 - 10605848
Alignment:
Q  248 cttagtttactagtttgttattctctaaattctggtagaaacat 291  Q
    ||||||||||||||||||||||| || |||||||||||||||||    
T  10605805 cttagtttactagtttgttattcactgaattctggtagaaacat 10605848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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