View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_24 (Length: 449)
Name: NF17716_high_24
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 6119525 - 6119937
Alignment:
| Q |
18 |
gatttttaagggacggagttggttttttatggggtcgaagaggactgaatgcgcgtaacaatccggtttggttttggtgaaccggcaatggttttttggg |
117 |
Q |
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| T |
6119525 |
gatttttaagggacggagttggttttttatggggtcgaagaggactgaatgggcgtaacaatccggtttggttttggtgaaccggcaatggttttttggg |
6119624 |
T |
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| Q |
118 |
aggagtttacgggttggaccgatgttggttcggtctaagaggataacggtgttgaagcgtgttactgttgtgtgcattgaggctatacctgcgttttgga |
217 |
Q |
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| T |
6119625 |
aggagtttacgggttggaccgatgttggttcggtctaagaggataacggtgttgaagcgtgttactgttgtgtgcattgaggctatacctgcgttttgga |
6119724 |
T |
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| Q |
218 |
ctagaagctcccacgtgccggggagtgtggcacgtgctgattttgggaatgtgaagagaagtatgagaaagcatatcacaaagagaggaatggtttccat |
317 |
Q |
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| T |
6119725 |
ctagaagctcccacgtgccggggagggtggcacgtgtgggagtttggaatgtgaagagttgtatgagaaagcatatcacaaagagaggaatggtttccat |
6119824 |
T |
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| Q |
318 |
tgaagattagagataagagtagtgagtggaagtgaagtgaagtgtggtgttggagaaggttctataaagaatgagaattaattaaagtggaaattgtaat |
417 |
Q |
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| T |
6119825 |
tgaagattagagataagagtagtgagtg-----gaagtgaagtgtggtgttggagaaggttctataaagaatgagaattaattaaagtggaaattgtaat |
6119919 |
T |
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| Q |
418 |
gaaaagtgtaagtataat |
435 |
Q |
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| T |
6119920 |
gaaaagtgtaagtataat |
6119937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 6117190 - 6117115
Alignment:
| Q |
351 |
gaagtgaagtgtggtgtt-----ggagaaggttctataaagaatgagaattaattaaagtggaaattgtaatgaaaagtg |
425 |
Q |
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| T |
6117190 |
gaagtgaagtgtggtgttaagctggggaagcttctataaagaatgagaattgat----gtggaaattgtaatgaaaagtg |
6117115 |
T |
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