View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_25 (Length: 447)
Name: NF17716_high_25
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 26130238 - 26130653
Alignment:
| Q |
16 |
atggatagatacagaacatgcacaaataccagacatattaataatatcaatcaagtataattaaaaaatactaagcctccaattacagatattaaacatt |
115 |
Q |
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| T |
26130238 |
atggatagatacagaacatgcacaaataccagacatattaataatatcaatcaagtataattaaaaaatactaagcctccaattacagatattaaacatt |
26130337 |
T |
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| Q |
116 |
cacttacataatcattctcagagttgtacgaatcctcgtgttcttgaatttcatcttcagttgtcattggagattgtgtctgcccaacattgatgtgact |
215 |
Q |
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| T |
26130338 |
cacttacataatcattctcagagttgtacgaatcctcgtgttcctgaatttcatcttcagttgaaattggagattgtgtctgcccaacattgatgtgact |
26130437 |
T |
|
| Q |
216 |
gatgcaagcaaacttggaccaccttggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagctagaatatgatgacatggcaat |
315 |
Q |
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| T |
26130438 |
gatgcaagcaaacttggaccacctaggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagatagaatatgatgacatggcaat |
26130537 |
T |
|
| Q |
316 |
ccaattgattccattctaaaacatgagcatttcagatcaattggttcttgacagtatgctacacgccaaacactaccatccccacaatatgttgaaactg |
415 |
Q |
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| T |
26130538 |
ccaattgattccattctaaaacatgagcatttcagatcaattggttcttgacagcatgctacacgccaaacactaccatcaccacaatattttgaaactg |
26130637 |
T |
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| Q |
416 |
tgaaaatataccacgt |
431 |
Q |
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| T |
26130638 |
tgaaaatataccacgt |
26130653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 427
Target Start/End: Complemental strand, 11011150 - 11010944
Alignment:
| Q |
221 |
aagcaaacttggaccaccttggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagctagaatatgatgacatggcaatccaat |
320 |
Q |
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|||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||||||| || ||| | |||||||||| ||| |||| |||| |
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| T |
11011150 |
aagcaaacttggaccacctttgcaaaaccaaacattttggaagatcatcaaaatcaagatacagaagaacaacaagaatatgatcacacagcaaaccaag |
11011051 |
T |
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| Q |
321 |
tgattccattctaaaacatgagcatttcagatcaattggttcttgacagtatgctacacgccaaacactaccatccccacaatatgttgaaactgtgaaa |
420 |
Q |
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| T |
11011050 |
cgattccattctaagacacgagcattttaaaacaactggttcttcacaatatgtcacatgccaaaccctaccatcaccacggtattttgaaatcgtgaaa |
11010951 |
T |
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| Q |
421 |
atatacc |
427 |
Q |
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||||||| |
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| T |
11010950 |
atatacc |
11010944 |
T |
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