View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_26 (Length: 434)
Name: NF17716_high_26
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_26 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 29649762 - 29649352
Alignment:
| Q |
20 |
tattaaacatatagcaatcttatattgaaaaagaaacaagacaaacacagtttaatatatttgtaggcctataatggttttgatttacatcactaagatc |
119 |
Q |
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| T |
29649762 |
tattaaacatatagcaatcttatattgaaaaagaaacaagacaaacacagtttaatatatttgtatgcctataatggttttgatttacatcactaagatc |
29649663 |
T |
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| Q |
120 |
agactgccacaacctgttctcatttacttcaaaaattgcaaaagcaatgcaaatgatgaggggataaacaagaaccacagggtcaaagcaaaattatctc |
219 |
Q |
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| T |
29649662 |
agactgccacaacctgttctcatttacttcaaaaattgaaaaagcaatgcaaatgatgagggtataaacaa------cagggtcaaagcaaaattatctc |
29649569 |
T |
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| Q |
220 |
acct---acggactatataacaggttcttagaattcgagattagacctaactgaactgtgcaaaaccaacttgtttggtgaagattgaccaaaccacaaa |
316 |
Q |
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| T |
29649568 |
acctcctacggactatataacaggttcttagaattcgagattagacctaactgaactctgcaaaaccaacttgtatggtgaagattgaccaaaccacaaa |
29649469 |
T |
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| Q |
317 |
actgtttgtaattaaggtgataaacgctcacatttaaagtaaggcacccatatactttctctaattaaggtgtcaaggtacggaccgcagttaaggcaac |
416 |
Q |
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| T |
29649468 |
actgtttgtaattaaggtgataaacgctcacatttaaagtaaggcacccatatactttctctaattaaggtgtcaaggtacggaccgcagttaaggcaa- |
29649370 |
T |
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| Q |
417 |
aaattccaacataggtca |
434 |
Q |
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| T |
29649369 |
aaattccaacataggtca |
29649352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 29643808 - 29643664
Alignment:
| Q |
20 |
tattaaacatatagcaatcttatattgaaaaagaaacaagacaaacacagtttaatatatttgtaggcctataatggttttgatttacatcactaagatc |
119 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643808 |
tattaaacatatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaagatc |
29643709 |
T |
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| Q |
120 |
agactgccacaacctgttctcatttacttcaaaaattgcaaaagc |
164 |
Q |
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||| || | || |||||||| ||||||||||||||| |||| |
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| T |
29643708 |
agagtgactcagttcattctcattaacttcaaaaattgcagaagc |
29643664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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