View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_31 (Length: 423)
Name: NF17716_high_31
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 14059869 - 14060263
Alignment:
| Q |
18 |
acttccaagcaagttttgaaatacaccagctaatctaagttccttcacatcctcggcgttgtcaaccaatgaatccatgaaggtaaagaacgagcaacat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14059869 |
acttccaagcaagttttgaaatacaccagctaatctaagctccttcacatcctcggcgttgtcaaccaatgaatccatgaaggtaaagaacgagcaacat |
14059968 |
T |
|
| Q |
118 |
tcgtagttgtagcgaacatctggacacatctcatatgctattaagtttcgnnnnnnntaaggtgtgacatcattgaacnnnnnnntaggaagtcttagtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14059969 |
tcgtagttgtagcgaacatctggacacatctcatatgctattaagtttcgaaaaaaataaggtgtgacatcattgaacaaaaaaataggaagtcttagtt |
14060068 |
T |
|
| Q |
218 |
ctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattatttttagatcccttat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14060069 |
ctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattatttttagatcccttat |
14060168 |
T |
|
| Q |
318 |
gcttttataagtattccaattacaactaagaacttcttcatcgtcatcatcttcttggtttaaggttgtattttccccggtttgattgggttcat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14060169 |
gcttttataagtattccaattacaactaagaacttcttcatcgtcatcatcttcttggtttaaggttgtattttccccggtttgattgggttcat |
14060263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 14048498 - 14048892
Alignment:
| Q |
18 |
acttccaagcaagttttgaaatacaccagctaatctaagttccttcacatcctcggcgttgtcaaccaatgaatccatgaaggtaaagaacgagcaacat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14048498 |
acttccaagcaagttttgaaatacaccagctaatctaagctccttcacatcctcggcgttgtcaaccaatgaatccatgaaggtaaagaatgagcaacat |
14048597 |
T |
|
| Q |
118 |
tcgtagttgtagcgaacatctggacacatctcatatgctattaagtttcgnnnnnnntaaggtgtgacatcattgaacnnnnnnntaggaagtcttagtt |
217 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||| |
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|
| T |
14048598 |
tcatagttgtagcgaacatccggacacatctcatatgctattaagtttcgaaaaaaataaggcgtgacatcattgaacaaaaaaataggaagtcgtagtt |
14048697 |
T |
|
| Q |
218 |
ctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattatttttagatcccttat |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
14048698 |
ctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctaccatttttagatcccttat |
14048797 |
T |
|
| Q |
318 |
gcttttataagtattccaattacaactaagaacttcttcatcgtcatcatcttcttggtttaaggttgtattttccccggtttgattgggttcat |
412 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
14048798 |
gcttttataagtattccattaacaactaagaacttcttcatcatcatcatcttcttggtttaaggttgtattttcccctgtttgattgggttcat |
14048892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 15900590 - 15900271
Alignment:
| Q |
19 |
cttccaagcaagttttgaaatacaccagctaatctaagttccttcacatcctcggcgttgtcaaccaatgaatccatgaaggtaaagaacgagcaacatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || || |||||||| || ||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
15900590 |
cttccaagcaagttttgaaatacaccagctgatctaagctcttttacatcctctgcattgtcaatcaatgaatccatgaagctaaagaacgagcaacatt |
15900491 |
T |
|
| Q |
119 |
cgtagttgtagcgaacatctggacacatctcatatgctattaagtttcgnnnnnnntaaggtgtgacatcattgaacnnnnnnntaggaagtcttagttc |
218 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||| ||||||| |||||||| |
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|
| T |
15900490 |
catagttgtaatgaacatctggacacatctcatatgctattaagtttcgaaaaacataaggagttacgtcattgaacaaaaaaataggaagccttagttc |
15900391 |
T |
|
| Q |
219 |
tccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattatttttagatcccttatg |
318 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||||||| ||||| |||||||||||||| | |||| ||||||||| | |||||||||||| |||| |
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|
| T |
15900390 |
gccactaaaccatttagacttgaaagaaatgttactccaggtccacttatctgtcttatttgctaccacttgaattcctactgtttttagatcccgtatg |
15900291 |
T |
|
| Q |
319 |
cttttataagtattccaatt |
338 |
Q |
| |
|
|| ||||||||||||||||| |
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|
| T |
15900290 |
ctcttataagtattccaatt |
15900271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 22 - 339
Target Start/End: Complemental strand, 15921637 - 15921320
Alignment:
| Q |
22 |
ccaagcaagttttgaaatacaccagctaatctaagttccttcacatcctcggcgttgtcaaccaatgaatccatgaaggtaaagaacgagcaacattcgt |
121 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || || |||||||| || ||||||| |||||||||||||||| ||||||||||||||||||| | |
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|
| T |
15921637 |
ccaagcaagttttgaaatacaccagctggtctaagctcttttacatcctctgcattgtcaatcaatgaatccatgaagctaaagaacgagcaacattcat |
15921538 |
T |
|
| Q |
122 |
agttgtagcgaacatctggacacatctcatatgctattaagtttcgnnnnnnntaaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctcc |
221 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||| |||| |||||| |
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| T |
15921537 |
agttgtaatgaacatctggacacatctcatatgctattaaatttcgaaaaaaataaggtgtgacgtcattaaacaaaaacataggaagccttaattctcc |
15921438 |
T |
|
| Q |
222 |
actcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattatttttagatcccttatgctt |
321 |
Q |
| |
|
||| ||||| ||||||||||| |||| ||||||||| |||| ||||||||||||||| | |||||||||||||| | |||||||||||| |||||| |
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|
| T |
15921437 |
actaaaccatttagacttgaacgaaatgttactccagttccactcatctgtcttatttgctaccactcgaattcctactgtttttagatcccgtatgctc |
15921338 |
T |
|
| Q |
322 |
ttataagtattccaatta |
339 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
15921337 |
ttataagtattccaatta |
15921320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 15873457 - 15873776
Alignment:
| Q |
19 |
cttccaagcaagttttgaaatacaccagctaatctaagttccttcacatcctcggcgttgtcaaccaatgaatccatgaaggtaaagaacgagcaacatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || || ||||| || || |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15873457 |
cttccaagcaagttttgaaatacaccagctgatctaagctcttttacatcgtcagcattgtcaaccaatgaatccatgaagctaaagaacgagcaacatt |
15873556 |
T |
|
| Q |
119 |
cgtagttgtagcgaacatctggacacatctcatatgctattaagtttcgnnnnnnntaaggtgtgacatcattgaacnnnnnnntaggaagtcttagttc |
218 |
Q |
| |
|
| |||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||| |||||||| |
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|
| T |
15873557 |
catagttgtaatgaacatctgaacacatctcatatgctactaagtttcgaaaaaaataaggtgtgacgtcattgaacaaaaaaataggaagccttagttc |
15873656 |
T |
|
| Q |
219 |
tccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattatttttagatcccttatg |
318 |
Q |
| |
|
|||| | ||||| |||||| |||| |||| ||||||||| |||| ||||||||||||||| | |||| ||||||||| | | |||||||||| |||| |
|
|
| T |
15873657 |
tccattaaaccatttagacgtgaacgaaatgttactccagttccactcatctgtcttatttgctaccacttgaattcctactgtctttagatcccgtatg |
15873756 |
T |
|
| Q |
319 |
cttttataagtattccaatt |
338 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
15873757 |
ctcttataagtattccaatt |
15873776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 15880268 - 15880504
Alignment:
| Q |
19 |
cttccaagcaagttttgaaatacaccagctaatctaagttccttcacatcctcggcgttgtcaaccaatgaatccatgaaggtaaagaacgagcaacatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || || ||||| || || |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15880268 |
cttccaagcaagttttgaaatacaccagctgatctaagctcttttacatcgtcagcattgtcaaccaatgaatccatgaagctaaagaacgagcaacatt |
15880367 |
T |
|
| Q |
119 |
cgtagttgtagcgaacatctggacacatctcatatgctattaagtttcgnnnnnnntaaggtgtgacatcattgaacnnnnnnntaggaagtcttagttc |
218 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||| ||||||| |||||||| |
|
|
| T |
15880368 |
catagttgtaatgaacatctggacacatctcatatgctactaagtttcgaaaaaaataag--gtgacgtcattgaacaaaaaaataggaagccttagttc |
15880465 |
T |
|
| Q |
219 |
tccactcaaccacttagacttgaaagaaacgttactcca |
257 |
Q |
| |
|
|||| | ||||| ||||||||||| |||| ||||||||| |
|
|
| T |
15880466 |
tccattaaaccatttagacttgaacgaaatgttactcca |
15880504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 15880546 - 15880619
Alignment:
| Q |
22 |
ccaagcaagttttgaaatacaccagctaatctaagttccttcacatcctcggcgttgtcaaccaatgaatccat |
95 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||||||||| |||||||| || ||||||||||||||||||| |
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|
| T |
15880546 |
ccaagcaagttttgaagtacatcggctaatctaagttcctttacatcctctgcagtgtcaaccaatgaatccat |
15880619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 44137249 - 44137314
Alignment:
| Q |
26 |
gcaagttttgaaatacaccagctaatctaagttccttcacatcctcggcgttgtcaaccaatgaat |
91 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| || || |||||| | || ||||||| |||||||| |
|
|
| T |
44137249 |
gcaagttttaaaatacaccagctgatctaagctcttttacatcccctgcattgtcaaacaatgaat |
44137314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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