View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_32 (Length: 421)
Name: NF17716_high_32
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 43164499 - 43164110
Alignment:
| Q |
16 |
gatggcactgcatatggaaattggaatcttaactttcttaccctttatatatttatagctaagggttttcatttgatgtgacaaaaatagttagtaaggg |
115 |
Q |
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| T |
43164499 |
gatgacactgcatatggaaattagaatcttaactttcttaccctttatatatttatagctaagggttttcatttgatgtgacaaaaatagttagtaaggg |
43164400 |
T |
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| Q |
116 |
catctccataatagaagttaaagttcatttgcatcgaaaagatggactttgtttatatttttatttgtgtcttaatgattttcattacagagaaaaggtg |
215 |
Q |
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| T |
43164399 |
catctccataatagaagttaaagttcatttgcatcgaaaagatggactttgtttatatttttatttgtgtcttaatgattttcattacagagaaaaggtg |
43164300 |
T |
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| Q |
216 |
aattggtttggttcttgatgatgtttggtaagctttaatgggaaaagtggttaatatttatgtacaatgcctcttttggaacctcaaattactatttttt |
315 |
Q |
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| T |
43164299 |
aattggtttgattcttgatgatgtttggtaagctttaatgggaaaagtggttaatatttatgtacaatgcctcttttggaacctcaaattactatttttt |
43164200 |
T |
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| Q |
316 |
gattcccttagtatattatttttggacccagaaatctaacacagatcttgaatcattttgattctcgaagcaatcacaaacccagaatat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164199 |
gattcccttagtatattatttttggacccagaaatctaacacagatcttgaatcattttgattctcgaagcaatcacaaacccagaatat |
43164110 |
T |
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