View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_41 (Length: 401)
Name: NF17716_high_41
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_41 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 28 - 401
Target Start/End: Complemental strand, 11809087 - 11808714
Alignment:
| Q |
28 |
ctatcaattttcttaattctcgtgatttaaacatgtttctataaatagaaaggaagaaaagaagttatgtttaggacataccatccccaaaaggaccaat |
127 |
Q |
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| T |
11809087 |
ctatcaattttcttaattctcgtgatttaaacatgtttctataaatagaaaggaagaaaagaagttatgtttaggacataccatccccaaaaggaccaat |
11808988 |
T |
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| Q |
128 |
ctgggaagacaatatccaagctccattgatctgaacaatatctaaacaatggtggtggtgaagcatttggtccttgaaacttatccaaaggaacaacagg |
227 |
Q |
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| T |
11808987 |
ctgggaacacaatatccaagctccattgatctgaacaatatctaaacaatggtggtggtgaagcatttggtccttgaaacttatccaaaggaacaacagg |
11808888 |
T |
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| Q |
228 |
cttatcttcacaatcaaacataagttccaaatcaggtaacttgccagggtacaatctcaataattgcaaaataccccacaaagtaaacacatctcttgtt |
327 |
Q |
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| T |
11808887 |
cttatcttcacaatcaaacataagttccaaatcaggcaacttgccagggtacaatctcaataattgcaaaataccccacaaagtgaacacatctcttgtt |
11808788 |
T |
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| Q |
328 |
tgaattgacttcctatacttttccacatacatttttccatccacaatcacaagcttgaaatgtgctgtcttttt |
401 |
Q |
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| T |
11808787 |
tgaattgacttcctatacttttccacatacatttttccatccacaatcacaagcttgaaatgtgctgtcttttt |
11808714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 64 - 395
Target Start/End: Complemental strand, 11801768 - 11801438
Alignment:
| Q |
64 |
ttctataaatagaaaggaagaaaagaagttatgtttaggacataccatccccaaaaggaccaatctgggaagacaatatccaagctccattgatctgaac |
163 |
Q |
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| T |
11801768 |
ttctaaaaatagaaaggatgaaaagaagtta-gtttagcatttaccatccccaaaaggaccaatctgggaagacaatatccaagctccattgatctgaac |
11801670 |
T |
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| Q |
164 |
aatatctaaacaatggtggtggtgaagcatttggtccttgaaacttatccaaaggaacaacaggcttatcttcacaatcaaacataagttccaaatcagg |
263 |
Q |
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| T |
11801669 |
aatatctaaacaaaggaggtggtgaagcatttggaccttgaaaattacccttatgaataacaggcctatcttcacaatcaaacataagttccaaatcagg |
11801570 |
T |
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| Q |
264 |
taacttgccagggtacaatctcaataattgcaaaataccccacaaagtaaacacatctcttgtttgaattgacttcctatacttttccacatacattttt |
363 |
Q |
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| T |
11801569 |
taacttgccaggaaacattctcaataattgcaaaataccccacaaagtgaacacatctcttgtttgaattgacttcctatacttctccacatacattttt |
11801470 |
T |
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| Q |
364 |
ccatccacaatcacaagcttgaaatgtgctgt |
395 |
Q |
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| T |
11801469 |
ccatccacaatcacaaccttaaaatttgctgt |
11801438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 2821336 - 2821421
Alignment:
| Q |
220 |
acaacaggcttatcttcacaatcaaacataagttccaaatcaggtaacttgccagggtacaatctcaataattgcaaaatacccca |
305 |
Q |
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| T |
2821336 |
acaacaggcttatcattgcaatcaaacatgagttccaagtctggaattttaccagggtactttctcagtaattgcagaatacccca |
2821421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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