View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_high_42 (Length: 401)
Name: NF17716_high_42
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 120 - 381
Target Start/End: Original strand, 48523299 - 48523560
Alignment:
| Q |
120 |
ccattgccgcccaccatcaccccctcctacgtctgccgccgctttctcagtcaatcatgatattattattaaatgaaccataaagctacaagagtgttta |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48523299 |
ccatcgccgcccaccatcaccccctcctacgtctgccaccgctttctcagtcaatcataatattattattaaatgaaccataaagctacaagagtgttta |
48523398 |
T |
|
| Q |
220 |
attttttcaaaacctgaaattttttatcatcttgcgagctgtacacataattcataagtttgatcgatgaaattgtttctgaagatgatggatttatttt |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48523399 |
attttttcaaaacctgaatttttttatcatcttgcgagctgtacacatgattcataagtttgatcgatgaaattgtttctgaagatgatggatttgtttt |
48523498 |
T |
|
| Q |
320 |
ctggttattgttttcagcggtgatggatttgtttgtgaaggcggcaatgacaacgatacggc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
48523499 |
ctggttattgttttcagcggtgatggatttgtttgtgacggcggcaacgacaacgatacggc |
48523560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48523182 - 48523231
Alignment:
| Q |
1 |
tgagatttaaaatttaaaatacaatgtatttgttcaataaaaatactgga |
50 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48523182 |
tgagatttaaaatttaaaaaacaatgtatttgttcaataaaaatactgga |
48523231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 253
Target Start/End: Original strand, 8538001 - 8538125
Alignment:
| Q |
126 |
ccgcccaccatca-ccccctcctacgtctgccgccgctttctcagtcaatcatgatattattattaaatgaaccataaagctacaagagtgtttaatttt |
224 |
Q |
| |
|
||||||||| ||| |||||||| ||||| |||||| ||| |||| ||||||||||| |||||| | ||||| || |||||||||||||| ||||||| |
|
|
| T |
8538001 |
ccgcccaccgtcatccccctccgacgtccgccgcctctt-ctcaatcaatcatgatgttatta---agtgaacaatgaagctacaagagtgcttaatttc |
8538096 |
T |
|
| Q |
225 |
ttcaaaacctgaaattttttatcatcttg |
253 |
Q |
| |
|
||||||||||| | |||||| |||||||| |
|
|
| T |
8538097 |
ttcaaaacctggatttttttctcatcttg |
8538125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University