View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_45 (Length: 385)
Name: NF17716_high_45
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_45 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 33223819 - 33224181
Alignment:
| Q |
18 |
aacccctccccaatgattcttagtctcattgacaaaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaagatcaattgtaagg |
117 |
Q |
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| T |
33223819 |
aacccctccccaatgattcttagtctcattgacaaaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaagatcaattgtaagg |
33223918 |
T |
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| Q |
118 |
agaagatttttgtttttagctctgtctataacaaatgtaataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcat |
217 |
Q |
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| T |
33223919 |
agaagatttttgtttttagctctgtctataacaaatgtcataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcat |
33224018 |
T |
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| Q |
218 |
ataatatcattaatgagaaatgaacttctgataaacctgcggagtatgacacagaccaagtctc--atggtccatcatgttcagcaccataagatgtccg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33224019 |
ataatatcattaatgagaaatgaacttctgataaacctgcggagtatgacacagaccaagtctcatatggtccatcatgttcagcaccataagatgtccg |
33224118 |
T |
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| Q |
316 |
catcatacctatttctccatatattcttatacgagcattggttcctacatttattctctgctc |
378 |
Q |
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| T |
33224119 |
catcatacctatttctccatatattcttatacgagcattggttcctacatttattttctgctc |
33224181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 33226785 - 33226872
Alignment:
| Q |
18 |
aacccctccccaatgattcttagtctcattgacaaaccttgttccgtaagatcttccagagtccttgatttcaatttgattaagaaga |
105 |
Q |
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| T |
33226785 |
aacccctccccaatgattcttagtctcattaacaaaccttgttccgtaagattttccagagtccttaatttcaattggatcaagaaga |
33226872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 282
Target Start/End: Original strand, 33226902 - 33227043
Alignment:
| Q |
138 |
tctgtctataacaaatgtaataaactttggtgcatggaaatggaactttaagagattgatgtcaccattaacgtcgtcatataatatcattaatgagaaa |
237 |
Q |
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||||| ||||||||||||||||||| | ||| | ||| ||||||||| |||||||||| |||||| | ||||||||||||| |||||||||| |
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| T |
33226902 |
tctgtgtataacaaatgtaataaacataggtactccaaaactgaactttaatagattgatgtaaccattt---ttgtcatataatatcgttaatgagaat |
33226998 |
T |
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| Q |
238 |
tgaacttctgataaacctgcggagtatgacacagaccaagtctca |
282 |
Q |
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| T |
33226999 |
caaacttctgaccaacgtgcggagtatgacaccgaccaagtctca |
33227043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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