View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_high_48 (Length: 378)

Name: NF17716_high_48
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_high_48
NF17716_high_48
[»] chr7 (2 HSPs)
chr7 (16-224)||(11098508-11098716)
chr7 (47-128)||(781351-781432)
[»] chr6 (2 HSPs)
chr6 (16-224)||(17998613-17998821)
chr6 (104-178)||(6530741-6530815)
[»] chr8 (4 HSPs)
chr8 (20-224)||(36283609-36283814)
chr8 (223-269)||(36283928-36283974)
chr8 (310-352)||(36283973-36284015)
chr8 (81-126)||(31710416-31710461)
[»] scaffold0010 (1 HSPs)
scaffold0010 (47-128)||(128644-128725)
[»] chr4 (4 HSPs)
chr4 (48-138)||(10755777-10755867)
chr4 (48-138)||(10969546-10969636)
chr4 (49-138)||(723290-723379)
chr4 (84-127)||(12325892-12325935)
[»] chr3 (2 HSPs)
chr3 (47-138)||(806770-806861)
chr3 (81-126)||(17594919-17594964)
[»] scaffold0130 (1 HSPs)
scaffold0130 (76-126)||(17288-17338)
[»] chr5 (1 HSPs)
chr5 (81-129)||(11203645-11203693)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 11098716 - 11098508
Alignment:
Q  16 gaaagatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098716 gaaagatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatg 11098617  T
Q  116 atttgagctcctcttgttggttgaatttttcatagctctcaagtagatcccaagtgtgtatatttcaaaataaaatctgagactatatatcatcttctag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |    
T  11098616 atttgagctcctcttgttggttgaatttttcatagctctcaagtagatccaaagtatgtatatttcaaaataaaatctgagactatatatcatcttctgg 11098517  T
Q  216 caattctct 224  Q
    |||||||||    
T  11098516 caattctct 11098508  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 781351 - 781432
Alignment:
Q  47 tgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctc 128  Q
    |||||||||| || ||| |||||||| ||| ||||| || |||||||| | | ||||||||||||||||| |||||||||||    
T  781351 tgttggcatcaagagaaaccataatgtattcatctctgcttgttcatatggaagactatgatggtgatgaattgagctcctc 781432  T

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Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 17998613 - 17998821
Alignment:
Q  16 gaaagatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998613 gaaagatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatg 17998712  T
Q  116 atttgagctcctcttgttggttgaatttttcatagctctcaagtagatcccaagtgtgtatatttcaaaataaaatctgagactatatatcatcttctag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |    
T  17998713 atttgagctcctcttgttggttgaatttttcatagctctcaagtagatccaaagtatgtatatttcaaaataaaatctgagactatatatcatcttctgg 17998812  T
Q  216 caattctct 224  Q
    |||||||||    
T  17998813 caattctct 17998821  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 6530741 - 6530815
Alignment:
Q  104 atgatggtgatgatttgagctcctcttgttggttgaatttttcatagctctcaagtagatcccaagtgtgtatat 178  Q
    ||||||||||||| ||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||    
T  6530741 atgatggtgatgaattgagctcctcttgttggttggatcttccatagctctcaagtagatccaaagtgtgtatat 6530815  T

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Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 36283609 - 36283814
Alignment:
Q  20 gatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgattt 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36283609 gatatgaaaagtaaaaccattcttccaagttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgattt 36283708  T
Q  120 gagctcctcttgttggttgaa-tttttcatagctctcaagtagatcccaagtgtgtatatttcaaaataaaatctgagactatatatcatcttctagcaa 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36283709 gagctcctcttgttggttgaattttttcatagctctcaagtagatccaaagtgtgtatatttcaaaataaaatctgagactatatatcatcttctggcaa 36283808  T
Q  219 ttctct 224  Q
    ||||||    
T  36283809 ttctct 36283814  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 36283928 - 36283974
Alignment:
Q  223 ctgaattattgtgcaggctgattgtgataataatattcaatcaaatt 269  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||    
T  36283928 ctgaattattgtgcaggctgattgtgataataatatttattcaaatt 36283974  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 36283973 - 36284015
Alignment:
Q  310 ttagtacttttagtaagcaatttccaactagatatggatctat 352  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  36283973 ttagcacttttagtaagcaatttccaactagatatggatctat 36284015  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 31710461 - 31710416
Alignment:
Q  81 tccgcctgttcataagaatgactatgatggtgatgatttgagctcc 126  Q
    |||||||||||||||| |||||||||||||||| || |||||||||    
T  31710461 tccgcctgttcataaggatgactatgatggtgacgaattgagctcc 31710416  T

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Target: scaffold0010 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 128644 - 128725
Alignment:
Q  47 tgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctc 128  Q
    |||||||||| || ||| |||||||| ||| ||||| || |||||||||| ||||||||||||||||||| |||||||||||    
T  128644 tgttggcatcaagagaaaccataatgtattcatctctgcatgttcataaggatgactatgatggtgatgaattgagctcctc 128725  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 10755867 - 10755777
Alignment:
Q  48 gttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttggttg 138  Q
    |||||||||||| ||| ||| |||||||| ||||||||||| |||| || |||||||| ||| | |||| ||||| |||||||||||||||    
T  10755867 gttggcatcgagagaaaccacaatgaattcatctccgcctgctcatgaggatgactataatgtttatgaattgaggtcctcttgttggttg 10755777  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 10969636 - 10969546
Alignment:
Q  48 gttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttggttg 138  Q
    |||||||||||| ||| ||| |||||||| ||||||||||| |||| || |||||||| ||| | |||| ||||| |||||||||||||||    
T  10969636 gttggcatcgagagaaaccacaatgaattcatctccgcctgctcatgaggatgactataatgtttatgaattgaggtcctcttgttggttg 10969546  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 723379 - 723290
Alignment:
Q  49 ttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttggttg 138  Q
    ||||||||||| | | |||||||||||| ||||||||||| |||| ||||||||||| ||| | |||| ||||| |||||||||| ||||    
T  723379 ttggcatcgagaggaaccataatgaattcatctccgcctgctcatgagaatgactataatgtttatgaattgaggtcctcttgtttgttg 723290  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 12325935 - 12325892
Alignment:
Q  84 gcctgttcataagaatgactatgatggtgatgatttgagctcct 127  Q
    ||||||||||||| | |||||||||||||| |||||||||||||    
T  12325935 gcctgttcataaggaggactatgatggtgacgatttgagctcct 12325892  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 806861 - 806770
Alignment:
Q  47 tgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttggttg 138  Q
    |||| |||||||| ||| |||||||||||| |||||| |||| | ||  | |||||||| ||||| |||| ||| | |||||||||||||||    
T  806861 tgttagcatcgagagaaaccataatgaattcatctcctcctgcttatgtggatgactataatggttatgaattgtggtcctcttgttggttg 806770  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 17594964 - 17594919
Alignment:
Q  81 tccgcctgttcataagaatgactatgatggtgatgatttgagctcc 126  Q
    |||||||||||| ||| |||||||||||||||| || |||||||||    
T  17594964 tccgcctgttcacaaggatgactatgatggtgacgaattgagctcc 17594919  T

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Target: scaffold0130 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 17288 - 17338
Alignment:
Q  76 ttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcc 126  Q
    |||| |||||||||||||||| |||||||||||||||| || |||| ||||    
T  17288 ttatatccgcctgttcataaggatgactatgatggtgacgaattgaactcc 17338  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 11203693 - 11203645
Alignment:
Q  81 tccgcctgttcataagaatgactatgatggtgatgatttgagctcctct 129  Q
    |||||||||| ||||| | |||||||||||||| || ||||||||||||    
T  11203693 tccgcctgtttataaggaagactatgatggtgacgaattgagctcctct 11203645  T

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