View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_high_50 (Length: 368)
Name: NF17716_high_50
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_50 |
 | |
|
| [»] scaffold0458 (2 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 24061281 - 24060929
Alignment:
| Q |
1 |
accgctggagcagcaaagcatcaagcagttgcactaagaagtggagcagacatgtccacattttatagttgcagctttgaagggtatcaagacacattat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| | |
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|
| T |
24061281 |
accgctggagcagcaaaaaatcaagcagttgcactaagaagtggagcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgt |
24061182 |
T |
|
| Q |
101 |
atacacattctttgaggcaattctatagagaatgtgatatcaatggaacagttgatttcatatttggaaatggtgcagttgttttgcaaaactgtaacat |
200 |
Q |
| |
|
||||||||||| | ||||| || ||| ||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24061181 |
atacacattctctaaggcagttttatcgagaatgcgatatatacggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacat |
24061082 |
T |
|
| Q |
201 |
ctatcctcgtcttcctctaagtggacaattcaatcctataacagctcaaggtcgaaccgacccgaatcaaaacactggaatttctatacaaaatgcaact |
300 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| | || ||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||| |
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|
| T |
24061081 |
ttatcctcgccttccgctaagtggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaact |
24060982 |
T |
|
| Q |
301 |
attaaaccagcagatgatttggctcccaacgttgcaactgttaaaacatacct |
353 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24060981 |
attaaaccagcagatgatttggctcctaacgttgcaactgttaaaacatacct |
24060929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 353
Target Start/End: Original strand, 39450867 - 39451198
Alignment:
| Q |
22 |
caagcagttgcactaagaagtggagcagacatgtccacattttatagttgcagctttgaagggtatcaagacacattatatacacattctttgaggcaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||| | ||||| | |
|
|
| T |
39450867 |
caagcagttgcactaagaagtggagcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagt |
39450966 |
T |
|
| Q |
122 |
tctatagagaatgtgatatcaatggaacagttgatttcatatttggaaatggtgcagttgttttgcaaaactgtaacatctatcctcgtcttcctctaag |
221 |
Q |
| |
|
| ||| ||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
39450967 |
tttatcgagaatgcgatatatacggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaag |
39451066 |
T |
|
| Q |
222 |
tggacaattcaatcctataacagctcaaggtcgaaccgacccgaatcaaaacactggaatttctatacaaaatgcaactattaaaccagcagatgatttg |
321 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39451067 |
tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttg |
39451166 |
T |
|
| Q |
322 |
gctcccaacgttgcaactgttaaaacatacct |
353 |
Q |
| |
|
||||| || |||| |||||| |||||||||| |
|
|
| T |
39451167 |
gctccgaaagttggaactgtacaaacatacct |
39451198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 353
Target Start/End: Original strand, 39460254 - 39460585
Alignment:
| Q |
22 |
caagcagttgcactaagaagtggagcagacatgtccacattttatagttgcagctttgaagggtatcaagacacattatatacacattctttgaggcaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||| | ||||| | |
|
|
| T |
39460254 |
caagcagttgcactaagaagtggagcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagt |
39460353 |
T |
|
| Q |
122 |
tctatagagaatgtgatatcaatggaacagttgatttcatatttggaaatggtgcagttgttttgcaaaactgtaacatctatcctcgtcttcctctaag |
221 |
Q |
| |
|
| ||| ||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
39460354 |
tttatcgagaatgcgatatatacggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaag |
39460453 |
T |
|
| Q |
222 |
tggacaattcaatcctataacagctcaaggtcgaaccgacccgaatcaaaacactggaatttctatacaaaatgcaactattaaaccagcagatgatttg |
321 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39460454 |
tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttg |
39460553 |
T |
|
| Q |
322 |
gctcccaacgttgcaactgttaaaacatacct |
353 |
Q |
| |
|
||||| || |||| |||||| |||||||||| |
|
|
| T |
39460554 |
gctccgaaagttggaactgtacaaacatacct |
39460585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 353
Target Start/End: Original strand, 39471739 - 39472070
Alignment:
| Q |
22 |
caagcagttgcactaagaagtggagcagacatgtccacattttatagttgcagctttgaagggtatcaagacacattatatacacattctttgaggcaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||| | ||||| | |
|
|
| T |
39471739 |
caagcagttgcactaagaagtggagcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagt |
39471838 |
T |
|
| Q |
122 |
tctatagagaatgtgatatcaatggaacagttgatttcatatttggaaatggtgcagttgttttgcaaaactgtaacatctatcctcgtcttcctctaag |
221 |
Q |
| |
|
| ||| ||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
39471839 |
tttatcgagaatgcgatatatacggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaag |
39471938 |
T |
|
| Q |
222 |
tggacaattcaatcctataacagctcaaggtcgaaccgacccgaatcaaaacactggaatttctatacaaaatgcaactattaaaccagcagatgatttg |
321 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39471939 |
tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttg |
39472038 |
T |
|
| Q |
322 |
gctcccaacgttgcaactgttaaaacatacct |
353 |
Q |
| |
|
||||| || |||| |||||| |||||||||| |
|
|
| T |
39472039 |
gctccgaaagttggaactgtacaaacatacct |
39472070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 353
Target Start/End: Complemental strand, 12795 - 12464
Alignment:
| Q |
22 |
caagcagttgcactaagaagtggagcagacatgtccacattttatagttgcagctttgaagggtatcaagacacattatatacacattctttgaggcaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||| | ||||| | |
|
|
| T |
12795 |
caagcagttgcactaagaagtggagcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagt |
12696 |
T |
|
| Q |
122 |
tctatagagaatgtgatatcaatggaacagttgatttcatatttggaaatggtgcagttgttttgcaaaactgtaacatctatcctcgtcttcctctaag |
221 |
Q |
| |
|
| ||| ||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
12695 |
tttatcgagaatgcgatatatacggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaag |
12596 |
T |
|
| Q |
222 |
tggacaattcaatcctataacagctcaaggtcgaaccgacccgaatcaaaacactggaatttctatacaaaatgcaactattaaaccagcagatgatttg |
321 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12595 |
tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttg |
12496 |
T |
|
| Q |
322 |
gctcccaacgttgcaactgttaaaacatacct |
353 |
Q |
| |
|
||||| || |||| |||||| |||||||||| |
|
|
| T |
12495 |
gctccgaaagttggaactgtacaaacatacct |
12464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 2754 - 2717
Alignment:
| Q |
22 |
caagcagttgcactaagaagtggagcagacatgtccac |
59 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2754 |
caagcagttgcactaagaagtggagcagatatgtccac |
2717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 53 - 326
Target Start/End: Complemental strand, 44474579 - 44474306
Alignment:
| Q |
53 |
tgtccacattttatagttgcagctttgaagggtatcaagacacattatatacacattctttgaggcaattctatagagaatgtgatatcaatggaacagt |
152 |
Q |
| |
|
||||||| || || || |||||||| ||||| |||||||| || || || |||||||| |||||||||| ||| | |||||||| ||| |||||||||| |
|
|
| T |
44474579 |
tgtccaccttctacagctgcagcttcgaaggctatcaagatactttgtacacacattccatgaggcaattttatcgcgaatgtgacatctatggaacagt |
44474480 |
T |
|
| Q |
153 |
tgatttcatatttggaaatggtgcagttgttttgcaaaactgtaacatctatcctcgtcttcctctaagtggacaattcaatcctataacagctcaaggt |
252 |
Q |
| |
|
||| |||||||||||||||| ||| |||||||| ||| || ||||| ||||| || ||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
44474479 |
tgacttcatatttggaaatgctgctgttgttttacaatcttgcaacatatatccccgacttcccaacagtggacaattcaacgctataaccgctcaaggc |
44474380 |
T |
|
| Q |
253 |
cgaaccgacccgaatcaaaacactggaatttctatacaaaatgcaactattaaaccagcagatgatttggctcc |
326 |
Q |
| |
|
||||| || || ||||||||||| |||| ||||||||| ||||||||||| ||| | | |||||||||||||| |
|
|
| T |
44474379 |
cgaacggatccaaatcaaaacacaggaacttctatacataatgcaactataaaagctactgatgatttggctcc |
44474306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 326
Target Start/End: Complemental strand, 44488784 - 44488480
Alignment:
| Q |
22 |
caagcagttgcactaagaagtggagcagacatgtccacattttatagttgcagctttgaagggtatcaagacacattatatacacattctttgaggcaat |
121 |
Q |
| |
|
|||||||||||| | |||||||| ||||| ||||||| || ||| ||||||||||||||||||| |||||||| | ||| ||||||| | ||||||| |
|
|
| T |
44488784 |
caagcagttgcaatgagaagtggggcagatatgtccagtttctatcgttgcagctttgaagggtaccaagacactctctatgcacattcactaaggcaat |
44488685 |
T |
|
| Q |
122 |
tctatagagaatgtgatatcaatggaacagttgatttcatatttggaaatggtgcagttgttttgcaaaactgtaacatctatcctcgtcttcctctaag |
221 |
Q |
| |
|
| |||| |||||| || || |||||||| | ||||| ||||||||||| | |||||||||||||||||||| || || |||||||||||||| || |
|
|
| T |
44488684 |
tttataaagaatgcgacatttatggaacaatagattttatatttggaaacgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttaca |
44488585 |
T |
|
| Q |
222 |
tggacaattcaatcctataacagctcaaggtcgaaccgacccgaatcaaaacactggaatttctatacaaaatgcaactattaaaccagcagatgatttg |
321 |
Q |
| |
|
||||||||||||||| || || |||||||| || || || || || |||||||| || ||||| || || ||| ||| |||||||||| || ||||| |
|
|
| T |
44488584 |
tggacaattcaatcccatcaccgctcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctgaagattta |
44488485 |
T |
|
| Q |
322 |
gctcc |
326 |
Q |
| |
|
||||| |
|
|
| T |
44488484 |
gctcc |
44488480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 44464040 - 44463822
Alignment:
| Q |
16 |
aagcatcaagcagttgcactaagaagtggagcagacatgtccacattttatagttgcagctttgaagggtatcaagacacattatatacacattctttga |
115 |
Q |
| |
|
||||| |||||||| ||||| |||| || ||||| | || |||||||| |||||||| || |||||||| |||||||| ||||| |||||||| | | |
|
|
| T |
44464040 |
aagcaccaagcagtggcacttagaaacggggcagatttatcaacattttacagttgcagtttcgaagggtaccaagacacgttatacacacattcactaa |
44463941 |
T |
|
| Q |
116 |
ggcaattctatagagaatgtgatatcaatggaacagttgatttcatatttggaaatggtgcagttgttttgcaaaactgtaacatctatcctcgtcttcc |
215 |
Q |
| |
|
| |||||||| ||||||||||| || |||||||||| ||||||||||| ||||||| | |||||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
44463940 |
gacaattctacagagaatgtgacatttatggaacagtagatttcatattcggaaatgctaaggttgttttccaaaattgtaacctctatccacgtcttcc |
44463841 |
T |
|
| Q |
216 |
tctaagtggacaattcaat |
234 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
44463840 |
aatgagtggacaattcaat |
44463822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 2576173 - 2576226
Alignment:
| Q |
241 |
acagctcaaggtcgaaccgacccgaatcaaaacactggaatttctatacaaaat |
294 |
Q |
| |
|
|||||||||||| |||| || || |||||||||||||||||||| || |||||| |
|
|
| T |
2576173 |
acagctcaaggtagaactgatccaaatcaaaacactggaatttcaatccaaaat |
2576226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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