View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_51 (Length: 365)
Name: NF17716_high_51
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 9545907 - 9546248
Alignment:
| Q |
19 |
gatcttccaatagtgatgatattttgtttgcattgtaagggttttcattgaaagtcataagaatttctttcgatatactgaatcaagtaaagagatgatt |
118 |
Q |
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| T |
9545907 |
gatcttccaatagtgatgatattttgtttgcattgcaagggttgtcattgaaagtcataagaatttctttcgatatactgaatcaagtaaagagatgatt |
9546006 |
T |
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| Q |
119 |
nnnnnnnttggaaaaacttaccctcatcaacaaatccaagcaaagatgacgcttaatgtcccttcgtaaatctttgggaagatcacgaactaaattgtct |
218 |
Q |
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| T |
9546007 |
aaaaaaattggaaaaacttaccctcatcaacaaatccaagcaaagatgacgcttaatgtcccttcgtaaatctttaggaagatcacgaactaaattgtct |
9546106 |
T |
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| Q |
219 |
tcatttacacctctagtttcttgccatttgtactgatcataccgcctgattcgctctctaaggtcgtcaggaagcaatctatgagacatccactgttcgg |
318 |
Q |
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| T |
9546107 |
tcatttacacctctagtttcttgccatttgtactgatcataccgcctgattcgctctctaaggtcgtcaggaagcaatctatgagacatccactgttctg |
9546206 |
T |
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| Q |
319 |
catccctcctttttactctcatctcctccaatcttgtctgtg |
360 |
Q |
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| T |
9546207 |
catccctcctttttactctcatctcctccaatcttgtttgtg |
9546248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 355
Target Start/End: Complemental strand, 41394883 - 41394655
Alignment:
| Q |
127 |
tggaaaaacttaccctcatcaacaaatccaagcaaagatgacgcttaatgtcccttcgtaaatctttgggaagatcacgaactaaattgtcttcatttac |
226 |
Q |
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| T |
41394883 |
tggagaaacataccctcatcagcaaagccaagcagagatgacgcttgatgtcccttcttaaatccttgggaagatttcggatcaaattgtcttcatcaac |
41394784 |
T |
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| Q |
227 |
acctctagtttcttgccatttgtactgatcataccgcctgattcgctctctaaggtcgtcaggaagcaatctatgagacatccactgttcggcatccctc |
326 |
Q |
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| T |
41394783 |
acctctagtttcttgccatttgtattgctcatgtcgtctgattctttctctcaagtggtcagggagtagtcgatgcgacatccactgttctgcatctctc |
41394684 |
T |
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| Q |
327 |
ctttttactctcatctcctccaatcttgt |
355 |
Q |
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| T |
41394683 |
cttttcactctcatctcctccaatcttgt |
41394655 |
T |
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