View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_high_52 (Length: 362)

Name: NF17716_high_52
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_high_52
NF17716_high_52
[»] chr8 (10 HSPs)
chr8 (17-362)||(24935598-24935949)
chr8 (164-267)||(24531219-24531322)
chr8 (307-362)||(26028151-26028206)
chr8 (119-267)||(26028237-26028397)
chr8 (320-362)||(17478770-17478812)
chr8 (319-361)||(20513234-20513276)
chr8 (315-361)||(24959619-24959665)
chr8 (315-354)||(4432866-4432905)
chr8 (319-361)||(24951709-24951751)
chr8 (320-361)||(24531134-24531175)
[»] chr5 (2 HSPs)
chr5 (320-361)||(40586958-40586999)
chr5 (196-261)||(40587049-40587114)
[»] chr4 (4 HSPs)
chr4 (320-361)||(38372058-38372099)
chr4 (315-362)||(46839727-46839774)
chr4 (320-360)||(8366235-8366275)
chr4 (320-360)||(8382236-8382276)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 24935949 - 24935598
Alignment:
Q  17 atgatgggcaccactacaagtatctcattgcagggctggtctttaaatatttcccataattctaaccaaattccaacctgtattttctctcactcacact 116  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24935949 atgatgggcaccactacaagtatctcattgcagtgctgatctttaaatatttcccataattctaaccaaattccaacctgtattttctctcactcacact 24935850  T
Q  117 atcaagggaaatctaattgtgcagacttacaatatcatttttgatatagtaagcaacatagaataaagacggtgagagttcacaccttaaggcgatgcag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24935849 atcaagggaaatctaattgtgcagacttacaatatcatttttgatatagtaagcaacatagaataaagacggtgagagttcacaccttaaggcgatgcag 24935750  T
Q  217 ctcaccaaaatttaacttggcacatggcagatccccttggtagatcagaaannnnnnncaaccactcc------ttcggtgggtctagcgagtttagcca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||      |||||| |||||||||| ||||||||    
T  24935749 ctcaccaaaatttaacttggcacatggcagatccccttggtagatcagaaatttttttcaaccactcctttgttttcggttggtctagcgactttagcca 24935650  T
Q  311 atattcataaataatcattgtcttcaaaacaagtccattttgcaaaacatac 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24935649 atattcataaataatcattgtcttcaaaacaagtccattttgcaaaacatac 24935598  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 24531322 - 24531219
Alignment:
Q  164 agtaagcaacatagaataaagacggtgagagttcacaccttaaggcgatgcagctcaccaaaatttaacttggcacatggcagatccccttggtagatca 263  Q
    ||||||||||||||||| || ||||| | |||||||||||||||| |||||| |  |   ||||||||||||||| ||||||||||||||||||||||||    
T  24531322 agtaagcaacatagaatgaaaacggtaaaagttcacaccttaaggtgatgcatcatagtcaaatttaacttggcaaatggcagatccccttggtagatca 24531223  T
Q  264 gaaa 267  Q
    ||||    
T  24531222 gaaa 24531219  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 26028206 - 26028151
Alignment:
Q  307 gccaatattcataaataatcattgtcttcaaaacaagtccattttgcaaaacatac 362  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  26028206 gccaatattcatcaataatcattgtcttcaaaacaagtccatgttgcaaaacatac 26028151  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 267
Target Start/End: Complemental strand, 26028397 - 26028237
Alignment:
Q  119 caagggaaatctaattgtgcagacttacaatatcatttttgatatagtaagcaacatagaataaagacggtgagagttcacaccttaaggcgatgcagct 218  Q
    ||||||| | |||||||| |||||||| || ||||| ||||||| ||||| | || |||||| || | |||||||||||||||||||||| || ||||||    
T  26028397 caagggacaactaattgtacagacttataacatcatctttgatacagtaaaccacgtagaatcaatatggtgagagttcacaccttaaggtgacgcagct 26028298  T
Q  219 cacca------------aaatttaacttggcacatggcagatccccttggtagatcagaaa 267  Q
    ||  |            ||||||||||||||||||||||||||| ||||||||||| ||||    
T  26028297 catgacctcagtcagagaaatttaacttggcacatggcagatcctcttggtagatctgaaa 26028237  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 17478812 - 17478770
Alignment:
Q  320 aataatcattgtcttcaaaacaagtccattttgcaaaacatac 362  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  17478812 aataatcattgtttttaaaacaagtccattttgcaaaacatac 17478770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 20513234 - 20513276
Alignment:
Q  319 aaataatcattgtcttcaaaacaagtccattttgcaaaacata 361  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  20513234 aaataatcattttctttaaaacaagtccattttgcaaaacata 20513276  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 24959665 - 24959619
Alignment:
Q  315 tcataaataatcattgtcttcaaaacaagtccattttgcaaaacata 361  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||    
T  24959665 tcatcaataagcactgtcttcaaaacaagtccattttgcaaaacata 24959619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 4432905 - 4432866
Alignment:
Q  315 tcataaataatcattgtcttcaaaacaagtccattttgca 354  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  4432905 tcatcaataatcattgtcttcaaaacaagtcctttttgca 4432866  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 24951709 - 24951751
Alignment:
Q  319 aaataatcattgtcttcaaaacaagtccattttgcaaaacata 361  Q
    |||||| |||||||||||||||||||||||  |||||||||||    
T  24951709 aaataagcattgtcttcaaaacaagtccatactgcaaaacata 24951751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 24531175 - 24531134
Alignment:
Q  320 aataatcattgtcttcaaaacaagtccattttgcaaaacata 361  Q
    ||||| |||||||||||||||||| |||||| ||||||||||    
T  24531175 aataagcattgtcttcaaaacaagcccatttagcaaaacata 24531134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 40586999 - 40586958
Alignment:
Q  320 aataatcattgtcttcaaaacaagtccattttgcaaaacata 361  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  40586999 aataagcattgtcttcaaaacaagtccattttgcaaaacata 40586958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 40587114 - 40587049
Alignment:
Q  196 tcacaccttaaggcgatgcagctcaccaaaatttaacttggcacatggcagatccccttggtagat 261  Q
    ||||||||||||  ||||| |||||   |||| ||||||| |||||||||||| ||||||||||||    
T  40587114 tcacaccttaagatgatgccgctcagtgaaatgtaacttgacacatggcagatgcccttggtagat 40587049  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 38372099 - 38372058
Alignment:
Q  320 aataatcattgtcttcaaaacaagtccattttgcaaaacata 361  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  38372099 aataagcattgtcttcaaaacaagtccattttgcaaaacata 38372058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 46839727 - 46839774
Alignment:
Q  315 tcataaataatcattgtcttcaaaacaagtccattttgcaaaacatac 362  Q
    |||| ||||||||||||||||||||||||||| |||| ||||| ||||    
T  46839727 tcatcaataatcattgtcttcaaaacaagtccttttttcaaaatatac 46839774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 8366235 - 8366275
Alignment:
Q  320 aataatcattgtcttcaaaacaagtccattttgcaaaacat 360  Q
    |||||||| |||||| ||||||||||| |||||||||||||    
T  8366235 aataatcactgtctttaaaacaagtcctttttgcaaaacat 8366275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 8382236 - 8382276
Alignment:
Q  320 aataatcattgtcttcaaaacaagtccattttgcaaaacat 360  Q
    |||||||| |||||| ||||||||||| |||||||||||||    
T  8382236 aataatcactgtctttaaaacaagtcctttttgcaaaacat 8382276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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