View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_55 (Length: 322)
Name: NF17716_high_55
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 14368951 - 14368659
Alignment:
| Q |
10 |
agtagcataggactggactcactactgttgttataacctcatattcacagtcatgtgatctcagccttcctgatcttaatctgacggtttgtattttgac |
109 |
Q |
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| T |
14368951 |
agtaacattggactggactcactactgttgttataacctcatattcacagtcatgtgatctcagccttcctgatcttaatctgacggtttgtattttgac |
14368852 |
T |
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| Q |
110 |
tttacaaaacatatccaaaaataaagtcaaaacataaactgtcagatcgaaatcatactgtctaggtcagcagcatgaatgcacgatgaccggtaatcta |
209 |
Q |
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| T |
14368851 |
tttacaaaacatatccaaaaataaagtcacaacataaactgtcagatcgaaatcatactgtctaggtcagcagcatgaatgcacgatgactcgtaatcta |
14368752 |
T |
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| Q |
210 |
tttcctagtaacgtgggtttataaattggatatcccgcttgttaaactgacactgatatgtgatatttttgtccattataataggatatttgg |
302 |
Q |
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| T |
14368751 |
tttcctagtaacgtgggtttataaattggatatcccgcttgttaaacagacactgatatgtgatatttttgtccattataataggatatttgg |
14368659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 26464507 - 26464224
Alignment:
| Q |
19 |
ggactggactcactactgttgttataacctcatattcacagtcatgtgatctcagccttcctgatcttaatctgacggtttgtattttgactttacaaaa |
118 |
Q |
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||||||||| | || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26464507 |
ggactggacgccctgctgttgttataacctcatattcgcagtcacgtgatctcagccttcctgatcttaatctgacggtttgtattttgactttacaaaa |
26464408 |
T |
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| Q |
119 |
catatccaaaaataaagtcaaaacataaactgtcagatcgaaatcatactgtctaggtcagcagcatgaatgcacgatgaccggtaatctatttcctagt |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||| ||||||| |||||||||||||||||| |
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| T |
26464407 |
catatccaaaaatgaagtcaaaacataaactgtcagatcaaaatcatactgtgtagatcagcagcgtgaatgcgcgatgactggtaatctatttcctagt |
26464308 |
T |
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| Q |
219 |
aacgtgggtttataaattggatatcccgcttgttaaactgacactgatatgtgatatttttgtccattataataggatatttgg |
302 |
Q |
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||||| |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26464307 |
aacgttggtttataaattggatatcctgcttgctaaactgacaatgatatgtgatatttttgtccattataataggatatttgg |
26464224 |
T |
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