View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_high_6 (Length: 606)

Name: NF17716_high_6
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_high_6
NF17716_high_6
[»] chr7 (13 HSPs)
chr7 (53-466)||(9428630-9429043)
chr7 (514-562)||(25251502-25251550)
chr7 (513-557)||(47195572-47195616)
chr7 (515-553)||(15015242-15015280)
chr7 (515-557)||(35165530-35165572)
chr7 (501-556)||(38911297-38911354)
chr7 (514-555)||(964762-964803)
chr7 (515-556)||(28323560-28323601)
chr7 (494-555)||(2622324-2622387)
chr7 (515-555)||(5458093-5458133)
chr7 (515-555)||(28200407-28200447)
chr7 (515-555)||(32315222-32315262)
chr7 (515-555)||(45979112-45979152)
[»] chr5 (12 HSPs)
chr5 (494-549)||(3551331-3551386)
chr5 (515-553)||(31159430-31159468)
chr5 (515-555)||(35109399-35109439)
chr5 (515-554)||(19783657-19783696)
chr5 (514-549)||(32460016-32460051)
chr5 (514-556)||(20211671-20211713)
chr5 (515-555)||(8545011-8545051)
chr5 (515-555)||(12285624-12285664)
chr5 (515-555)||(13864343-13864383)
chr5 (515-559)||(16485985-16486029)
chr5 (515-555)||(23118073-23118113)
chr5 (515-555)||(36623196-36623236)
[»] chr4 (18 HSPs)
chr4 (515-557)||(19124644-19124686)
chr4 (515-557)||(7371570-7371612)
chr4 (514-555)||(11949684-11949725)
chr4 (515-555)||(53530008-53530048)
chr4 (515-554)||(40847089-40847128)
chr4 (513-552)||(42914081-42914120)
chr4 (514-556)||(18635528-18635570)
chr4 (494-556)||(3299093-3299157)
chr4 (514-555)||(14136090-14136131)
chr4 (498-556)||(29910459-29910519)
chr4 (514-555)||(39678566-39678607)
chr4 (515-555)||(5534509-5534549)
chr4 (515-551)||(6094199-6094235)
chr4 (496-549)||(24063209-24063264)
chr4 (515-555)||(24837495-24837535)
chr4 (515-555)||(28751210-28751250)
chr4 (515-555)||(45970729-45970769)
chr4 (497-554)||(52936641-52936700)
[»] chr1 (9 HSPs)
chr1 (514-555)||(47835736-47835777)
chr1 (514-548)||(17683744-17683778)
chr1 (515-557)||(47071980-47072022)
chr1 (515-552)||(4859085-4859122)
chr1 (515-556)||(8148387-8148428)
chr1 (515-556)||(31401675-31401716)
chr1 (515-554)||(10654469-10654509)
chr1 (516-556)||(26763566-26763606)
chr1 (515-555)||(32950783-32950823)
[»] chr6 (9 HSPs)
chr6 (515-562)||(4450254-4450301)
chr6 (515-557)||(6470638-6470680)
chr6 (515-555)||(7081676-7081716)
chr6 (494-555)||(9311929-9311992)
chr6 (515-556)||(10118915-10118956)
chr6 (515-555)||(8810639-8810679)
chr6 (498-555)||(13392986-13393045)
chr6 (515-555)||(13496115-13496155)
chr6 (515-551)||(17420740-17420776)
[»] chr8 (8 HSPs)
chr8 (515-555)||(17062361-17062401)
chr8 (515-555)||(17585957-17585997)
chr8 (515-561)||(36919304-36919350)
chr8 (515-560)||(42060479-42060524)
chr8 (515-556)||(42367727-42367768)
chr8 (515-556)||(43073458-43073499)
chr8 (515-555)||(1877684-1877724)
chr8 (514-554)||(40512651-40512691)
[»] chr3 (12 HSPs)
chr3 (515-555)||(29791775-29791815)
chr3 (514-554)||(38573594-38573634)
chr3 (514-553)||(39100437-39100476)
chr3 (515-561)||(3613212-3613258)
chr3 (515-556)||(2563927-2563968)
chr3 (515-556)||(22462310-22462351)
chr3 (515-556)||(22486681-22486722)
chr3 (515-555)||(5117207-5117247)
chr3 (515-555)||(6835166-6835206)
chr3 (515-555)||(7824806-7824846)
chr3 (515-559)||(27303678-27303722)
chr3 (495-556)||(53681877-53681940)
[»] chr2 (7 HSPs)
chr2 (514-556)||(9459078-9459120)
chr2 (496-555)||(40967372-40967433)
chr2 (517-554)||(9718394-9718431)
chr2 (515-556)||(35727435-35727476)
chr2 (515-555)||(7029413-7029453)
chr2 (515-555)||(22358047-22358087)
chr2 (515-555)||(37320539-37320579)
[»] scaffold0308 (1 HSPs)
scaffold0308 (515-556)||(6843-6884)
[»] scaffold0896 (1 HSPs)
scaffold0896 (515-555)||(3140-3180)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 53 - 466
Target Start/End: Original strand, 9428630 - 9429043
Alignment:
Q  53 ttttttacctccataataggaaaccatcctagtcaatattctactccattaaatgaaataaacagctcatatttaaaaactaaaacaaggctgctgcatt 152  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9428630 ttttttacctccatgttaggaaaccatcctagtcaatattctactccattaaatgaaataaacagctcatatttaaaaattaaaacaaggctgctgcatt 9428729  T
Q  153 gcttacacttgctgtgtctctagtctctacccgacgtggaagggcacgttttggttccaatgtgacctgtaggcatgtgattggaagtaggtgaggttcg 252  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9428730 gcttacacttgctgtttctctagtctctacccgacgtggaagggcacgttttggttccaatgtgacctgtaggcatgtgattggaagttggtgaggttcg 9428829  T
Q  253 atatgtaagagcatctctttttccgtaccaaatggagggttagggttttctcgattccgatggatgacgtcattcctccccacaatgatagccccaaagt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9428830 atatgtaggagcatctctttttccgtaccaaatggagggttagggttttctcgattccgatggatgacgtcattcctccccacaatgatagctccaaagt 9428929  T
Q  353 tccaaatcatactatagtcggannnnnnnnnngagaaagatagtcggatattttatgtcaactcctttttgtaagagcactaaaatttctatagtcggtt 452  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9428930 tccaaatcatactatagtcggattatttttttgagaaagatagtcggatattttatgtcaactcctttttgtaagagcactaaaatttctatagtcggtt 9429029  T
Q  453 atcaatggaagatg 466  Q
    ||||||||||||||    
T  9429030 atcaatggaagatg 9429043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 514 - 562
Target Start/End: Complemental strand, 25251550 - 25251502
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacggaaacat 562  Q
    ||||||||||| ||||||| || ||||||||||||||||||||| ||||    
T  25251550 tatatattatgcattgtttataccaactgagttaagctcacggagacat 25251502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 557
Target Start/End: Original strand, 47195572 - 47195616
Alignment:
Q  513 ttatatattatgtattgtttttatcaactgagttaagctcacgga 557  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  47195572 ttatatattatgtattgtatttattaaccgagttaagctcacgga 47195616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 553
Target Start/End: Complemental strand, 15015280 - 15015242
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctca 553  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  15015280 atatattatgcattgttcttatcaactgagttaagctca 15015242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 557
Target Start/End: Complemental strand, 35165572 - 35165530
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgga 557  Q
    ||||||||||||||||  |||||||||||||||| ||||||||    
T  35165572 atatattatgtattgtcgttatcaactgagttaaactcacgga 35165530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 556
Target Start/End: Complemental strand, 38911354 - 38911297
Alignment:
Q  501 gaacttcaaatctt--atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||| |||  |||||||||  ||||| |||||||||||||||||||||||||    
T  38911354 gaacttcaaaccttgcatatattatacattgtctttatcaactgagttaagctcacgg 38911297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 964762 - 964803
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||| ||||||| |||| |||||||||||||||||    
T  964762 tatatattatgcattgtttctatcgactgagttaagctcacg 964803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 28323601 - 28323560
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  28323601 atatattatgcattgttcttatcaactgaattaagctcacgg 28323560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 555
Target Start/End: Complemental strand, 2622387 - 2622324
Alignment:
Q  494 ggggtttgaacttcaaatctta--tatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||||  ||||||||  ||||||||||||||||  |||||||| || ||||||||||    
T  2622387 ggggtttgaactctaaatcttacatatattatgtattgttcctatcaactaagctaagctcacg 2622324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 5458093 - 5458133
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| |||||| |||||||||||| ||||||||||    
T  5458093 atatattatgcattgttcttatcaactgagctaagctcacg 5458133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 28200407 - 28200447
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  28200407 atatattatgtattgttcctaccaactgagttaagctcacg 28200447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 32315262 - 32315222
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  32315262 atatattatgtaatgtccttatcaactgagttaagctcacg 32315222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 45979152 - 45979112
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||| |||||||| |||||||||| ||||    
T  45979152 atatattatgtattgtctttatcaaatgagttaagcccacg 45979112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 494 - 549
Target Start/End: Complemental strand, 3551386 - 3551331
Alignment:
Q  494 ggggtttgaacttcaaatcttatatattatgtattgtttttatcaactgagttaag 549  Q
    |||||||||||||||   |||||||||||||||||||||||||||||| |||||||    
T  3551386 ggggtttgaacttcaggccttatatattatgtattgtttttatcaacttagttaag 3551331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 553
Target Start/End: Complemental strand, 31159468 - 31159430
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctca 553  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  31159468 atatattatgtattgtctttatcaactgagttaagctca 31159430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 35109439 - 35109399
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  35109439 atatattatgtattgtctttaccaactgagttaagctcacg 35109399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Original strand, 19783657 - 19783696
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcac 554  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  19783657 atatattatgtattgtctttatcaactaagttaagctcac 19783696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 549
Target Start/End: Complemental strand, 32460051 - 32460016
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaag 549  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32460051 tatatattatgtattgtctttatcaactgagttaag 32460016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 556
Target Start/End: Complemental strand, 20211713 - 20211671
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||||| ||||||||||||||||||||| | |||||||    
T  20211713 tatatattatgcattgtttttatcaactgagttgaactcacgg 20211671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 8545011 - 8545051
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| |||||  |||||||||||||||||||||||    
T  8545011 atatattatgcattgtccttatcaactgagttaagctcacg 8545051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 12285624 - 12285664
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  12285624 atatattatatattgtctttatcaactgagttaagttcacg 12285664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 13864383 - 13864343
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  13864383 atatattatgtattgttcataccaactgagttaagctcacg 13864343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 559
Target Start/End: Original strand, 16485985 - 16486029
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacggaaa 559  Q
    |||||||||||||||| |||| | ||| |||||||||||||||||    
T  16485985 atatattatgtattgtctttaccgacttagttaagctcacggaaa 16486029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 23118073 - 23118113
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| |||||  |||||||||||||||||||||||    
T  23118073 atatattatgcattgtccttatcaactgagttaagctcacg 23118113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 36623196 - 36623236
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| ||| || |||||||||||||||||||||||    
T  36623196 atatattatgcattattcttatcaactgagttaagctcacg 36623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 557
Target Start/End: Original strand, 19124644 - 19124686
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgga 557  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  19124644 atatattatgtattgtctttatcaactgagttaagctcacgga 19124686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 557
Target Start/End: Original strand, 7371570 - 7371612
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgga 557  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  7371570 atatattatgtattgtccttatcaactgagttaagctcacgga 7371612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 11949684 - 11949725
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  11949684 tatatattatgtattgttcttatcaactgagctaagctcacg 11949725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 53530048 - 53530008
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  53530048 atatattatgcattgtttttattaactgagttaagctcacg 53530008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Original strand, 40847089 - 40847128
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcac 554  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  40847089 atatattatgtattgtctctatcaactgagttaagctcac 40847128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 552
Target Start/End: Original strand, 42914081 - 42914120
Alignment:
Q  513 ttatatattatgtattgtttttatcaactgagttaagctc 552  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  42914081 ttatatattatgtattgtttctatcaactgaattaagctc 42914120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 556
Target Start/End: Complemental strand, 18635570 - 18635528
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||||| |||||  ||||||||||||||||||||||||    
T  18635570 tatatattatgcattgtccttatcaactgagttaagctcacgg 18635528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 3299093 - 3299157
Alignment:
Q  494 ggggtttgaacttcaaatctt--atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||||| ||||| |||  |||||||||| |||||||| | |||||||||||| |||||||    
T  3299093 ggggtttgaacctcaaaccttgcatatattatgcattgttttaaccaactgagttaaactcacgg 3299157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 14136131 - 14136090
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
T  14136131 tatatattatgcattgtctttatcaactgagctaagctcacg 14136090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 556
Target Start/End: Complemental strand, 29910519 - 29910459
Alignment:
Q  498 tttgaacttcaaatctt--atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||||| |||||  |||||||||| |||||  ||||||| ||||||||||||||||    
T  29910519 tttgaacttcagatcttgcatatattatgcattgtccttatcaattgagttaagctcacgg 29910459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 39678566 - 39678607
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||||||||| ||||||||||||| | ||||||||    
T  39678566 tatatattatgtattgtctttatcaactgagcttagctcacg 39678607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 5534549 - 5534509
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||| ||||||| ||| |||||||||||||||||||    
T  5534549 atatattatatattgttattaccaactgagttaagctcacg 5534509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Original strand, 6094199 - 6094235
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagct 551  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  6094199 atatattatgtattgtttctatcaaccgagttaagct 6094235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 24063209 - 24063264
Alignment:
Q  496 ggtttgaacttcaaatctt--atatattatgtattgtttttatcaactgagttaag 549  Q
    |||||||||| ||||||||  |||||||||| ||||| | ||||||||||||||||    
T  24063209 ggtttgaactccaaatcttgcatatattatgcattgtctctatcaactgagttaag 24063264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 24837495 - 24837535
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||||  |||||||| |||||||||||||    
T  24837495 atatattatgtattgttcatatcaactaagttaagctcacg 24837535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 28751250 - 28751210
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  28751250 atatattatgtattgtttatactaactgagttaagctcacg 28751210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 45970729 - 45970769
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| ||||||| || |||||||||||||||||||    
T  45970729 atatattatgcattgtttctaccaactgagttaagctcacg 45970769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 554
Target Start/End: Complemental strand, 52936700 - 52936641
Alignment:
Q  497 gtttgaacttcaaatctta--tatattatgtattgtttttatcaactgagttaagctcac 554  Q
    |||||||| ||||| ||||  ||||||||  ||||||| |||||||||||||||||||||    
T  52936700 gtttgaacctcaaaccttacatatattatacattgtttctatcaactgagttaagctcac 52936641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 47835736 - 47835777
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  47835736 tatatattatgtattgtttttatcaactgagttaaactcacg 47835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 548
Target Start/End: Complemental strand, 17683778 - 17683744
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaa 548  Q
    ||||||||||| |||||||||||||||||||||||    
T  17683778 tatatattatgcattgtttttatcaactgagttaa 17683744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 557
Target Start/End: Original strand, 47071980 - 47072022
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgga 557  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  47071980 atatattatgtattgttcttaccaattgagttaagctcacgga 47072022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 4859122 - 4859085
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctc 552  Q
    |||||||||||||| || ||||||||||||||||||||    
T  4859122 atatattatgtattattcttatcaactgagttaagctc 4859085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 8148387 - 8148428
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||||||||||| ||| |||||||| |||||||||||    
T  8148387 atatattatgtattgttcttaccaactgagctaagctcacgg 8148428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 31401675 - 31401716
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||| ||||||||| ||||||||||||| |||||||    
T  31401675 atatattatgcattgtttttgtcaactgagttaaactcacgg 31401716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 554
Target Start/End: Original strand, 10654469 - 10654509
Alignment:
Q  515 atatattatgtattgt-ttttatcaactgagttaagctcac 554  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  10654469 atatattatgcattgtcttttatcaactgagttaagctcac 10654509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 26763566 - 26763606
Alignment:
Q  516 tatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||| |||||| |||||||||||| |||||||||||    
T  26763566 tatattatgcattgttcttatcaactgagctaagctcacgg 26763606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 32950783 - 32950823
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| ||||||| || |||||||||||||||||||    
T  32950783 atatattatgcattgtttataccaactgagttaagctcacg 32950823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 4450301 - 4450254
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacggaaacat 562  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  4450301 atatattatgcattgtctttatcaactgagctaagctcacggaaacat 4450254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 557
Target Start/End: Original strand, 6470638 - 6470680
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgga 557  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  6470638 atatattatgcattgtctttatcaactgagttaagctcacgga 6470680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 7081676 - 7081716
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  7081676 atatattatgtattgtctttatcaactgagctaagctcacg 7081716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 555
Target Start/End: Original strand, 9311929 - 9311992
Alignment:
Q  494 ggggtttgaacttcaaatctta--tatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||| ||||||||||  ||||||||||||| ||  || |||||||||||||||||||    
T  9311929 ggggtttgaacctcaaatcttacatatattatgtattattcataccaactgagttaagctcacg 9311992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 10118956 - 10118915
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||||||||||| ||| |||||||| |||||||||||    
T  10118956 atatattatgtattgttcttaccaactgagctaagctcacgg 10118915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 8810679 - 8810639
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||| |||| |||||||| ||||||||||    
T  8810679 atatattatgtattgtctttaccaactgagctaagctcacg 8810639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 555
Target Start/End: Complemental strand, 13393045 - 13392986
Alignment:
Q  498 tttgaacttcaaatctt--atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||||  |||| |||| ||||||| |||||||||||| | ||||||||    
T  13393045 tttgaacttcaaatcttgcatatgttatatattgttcttatcaactgagctcagctcacg 13392986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 13496155 - 13496115
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  13496155 atatattatgcattgttcatatcaactgagttaagctcacg 13496115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Original strand, 17420740 - 17420776
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagct 551  Q
    |||||||||||||||||| || |||||||||||||||    
T  17420740 atatattatgtattgtttataccaactgagttaagct 17420776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 17062361 - 17062401
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  17062361 atatattatgtattgtctatatcaactgagttaagctcacg 17062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 17585997 - 17585957
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  17585997 atatattatgtattgtctatatcaactgagttaagctcacg 17585957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 36919350 - 36919304
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacggaaaca 561  Q
    |||||||||  |||||| ||| |||||||||||||||||||||||||    
T  36919350 atatattatacattgttcttaccaactgagttaagctcacggaaaca 36919304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 42060479 - 42060524
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacggaaac 560  Q
    |||||||  |||||||||||| ||||||||||||| ||||||||||    
T  42060479 atatattcggtattgtttttaccaactgagttaagttcacggaaac 42060524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 42367768 - 42367727
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||| |||||| |||||||||||| |||||||||||    
T  42367768 atatattatgcattgttcttatcaactgagctaagctcacgg 42367727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 43073458 - 43073499
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||| |||||||||| ||||||||||||||| ||||    
T  43073458 atatattatgcattgtttttaccaactgagttaagcttacgg 43073499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 1877684 - 1877724
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  1877684 atatattatgcattgtctatatcaactgagttaagctcacg 1877724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 554
Target Start/End: Original strand, 40512651 - 40512691
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcac 554  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  40512651 tatatattatgtattgtctctaccaactgagttaagctcac 40512691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 29791815 - 29791775
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  29791815 atatattatgtattgtttctatcaactgagttaaactcacg 29791775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 514 - 554
Target Start/End: Original strand, 38573594 - 38573634
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcac 554  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  38573594 tatatattatgcattgttcttatcaactgagttaagctcac 38573634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 553
Target Start/End: Original strand, 39100437 - 39100476
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctca 553  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  39100437 tatatattatgcattgttcttatcaactgagttaagctca 39100476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 3613258 - 3613212
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacggaaaca 561  Q
    ||||| ||||||||||  ||||||||||||||||| |||||||||||    
T  3613258 atatactatgtattgtccttatcaactgagttaagttcacggaaaca 3613212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 2563968 - 2563927
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||  ||| |||||||||||||||||||||||||||    
T  2563968 atatattattcattatttttatcaactgagttaagctcacgg 2563927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 22462351 - 22462310
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||| |||||  ||||||||||||||||||||||||    
T  22462351 atatattatgcattgtccttatcaactgagttaagctcacgg 22462310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 22486722 - 22486681
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||| |||||| ||| ||||||||||||||||||||    
T  22486722 atatattatgcattgttcttaccaactgagttaagctcacgg 22486681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 5117247 - 5117207
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||||||||  |||||||||||| ||||||||||    
T  5117247 atatattatgtattgtccttatcaactgagctaagctcacg 5117207  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 6835206 - 6835166
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||| ||||||||| ||| |||||||||||||||    
T  6835206 atatattatgttttgtttttaccaattgagttaagctcacg 6835166  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 7824846 - 7824806
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||| | ||||||||||||||| ||||||    
T  7824846 atatattatgtattgtctatatcaactgagttaaactcacg 7824806  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 559
Target Start/End: Complemental strand, 27303722 - 27303678
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacggaaa 559  Q
    |||||||||| | |||||||||||||||||||| ||| |||||||    
T  27303722 atatattatgcaatgtttttatcaactgagttaggcttacggaaa 27303678  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 556
Target Start/End: Original strand, 53681877 - 53681940
Alignment:
Q  495 gggtttgaacttcaaatctt--atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||| |||| |||||||||  |||||||||| |||||| ||| |||||||| |||||||||||    
T  53681877 gggttcgaacctcaaatcttgcatatattatgcattgttcttaccaactgaggtaagctcacgg 53681940  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 556
Target Start/End: Original strand, 9459078 - 9459120
Alignment:
Q  514 tatatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||    
T  9459078 tatatattatgcattgtctttatcaactgagctaagctcacgg 9459120  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 555
Target Start/End: Original strand, 40967372 - 40967433
Alignment:
Q  496 ggtttgaacttcaaatctt--atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||| ||||| |||  |||||||||| |||||  |||||||||||||||||||||||    
T  40967372 ggtttgaacctcaaaccttgcatatattatgcattgtccttatcaactgagttaagctcacg 40967433  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 9718431 - 9718394
Alignment:
Q  517 atattatgtattgtttttatcaactgagttaagctcac 554  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  9718431 atattatgcattgttcttatcaactgagttaagctcac 9718394  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 35727476 - 35727435
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    |||||||||| |||||| ||| ||||||||||||||||||||    
T  35727476 atatattatgcattgttcttaccaactgagttaagctcacgg 35727435  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 7029413 - 7029453
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||||||||||||||||||| |||||||| ||| ||||||    
T  7029413 atatattatgtattgtttttaccaactgagctaatctcacg 7029453  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 22358047 - 22358087
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    ||||| |||| ||| ||||||||||||||||||||||||||    
T  22358047 atatactatgcattatttttatcaactgagttaagctcacg 22358087  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 37320539 - 37320579
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||| ||||| |||| |||||||||||||||||||    
T  37320539 atatattatgcattgtctttaccaactgagttaagctcacg 37320579  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 6843 - 6884
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacgg 556  Q
    ||||||||||||||||||||| |||||||| |||| ||||||    
T  6843 atatattatgtattgtttttaccaactgagataagttcacgg 6884  T

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Target: scaffold0896 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 3180 - 3140
Alignment:
Q  515 atatattatgtattgtttttatcaactgagttaagctcacg 555  Q
    |||||||||||||||| |||| |||||||| ||||||||||    
T  3180 atatattatgtattgtctttaccaactgagctaagctcacg 3140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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