View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_61 (Length: 303)
Name: NF17716_high_61
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_61 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 49209881 - 49210156
Alignment:
| Q |
16 |
catacactaaccttggaatgtgatgtataccattaaaaatgccatttgaaaagtgctctcaagaaaatcagtttcattaaatttggagctaacggcttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49209881 |
catacactaaccttggaatgtgatgtataccattaaaaatgccatttgaaaagtgctctcaagaaaatcagtttcattaaatttggagctaatggcttcc |
49209980 |
T |
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| Q |
116 |
nnnnnnnncttctttgttgggcnnnnnnngctcataaaataaagctttaacaatggtgatttgagatttttgaaaagaaaatgaggaatatgttaaaaag |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49209981 |
aaaaaaaacttctttgttgggctttttttgctcataaaataaagctttaacaatggtgatttgagatttgtgaaaagaaaatgaggaatatgttaaaaag |
49210080 |
T |
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| Q |
216 |
agttttagaaattacataaatgaattatatttctcacactactctcttatctcatacttttctaactttcatctca |
291 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49210081 |
agttttagaaattacataaatgaattatatttcgcacactactctcttatctcatacttttctaactttcatctca |
49210156 |
T |
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