View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_high_64 (Length: 300)
Name: NF17716_high_64
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_64 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 24439710 - 24439426
Alignment:
| Q |
16 |
aatattatgtaagatgtaggctcgactgcattgtgtatagggtgggatttgcaaacatgatatttatttgtcaattgaccagctaatatgatcatcttgc |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24439710 |
aatattatgtaagatgtaggctggactgcattgtgtatagggtgggatttgcaaacatgatatttatttgtcaattgaccagctaatatgatcatcttgc |
24439611 |
T |
|
| Q |
116 |
annnnnnnnnnnnnatagcacatttcacgttcgatcaagaaattttcaattgcagagaagcaagctctggttcgtctgtagcatctgttcatggtgctgt |
215 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24439610 |
accccctaccccccatagcacatttcacgtttgatcaagaaattttcaattgcagagaggcaagctctggttcgtctgtagcatctgttcatggtgctgt |
24439511 |
T |
|
| Q |
216 |
actagctttggtagcatctgtattatcagccccatatgacatgcccaggtttgtccaacagtataatatccactgaacatgattg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24439510 |
actagctttggtagcatctgtattatcagccccatatgacatgcctaggtttgtccaacagtataatatccactgaacatgattg |
24439426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 130 - 275
Target Start/End: Complemental strand, 24464203 - 24464053
Alignment:
| Q |
130 |
atagcacatttcacgttcgatcaag-----aaattttcaattgcagagaagcaagctctggttcgtctgtagcatctgttcatggtgctgtactagcttt |
224 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24464203 |
atagcacatttcacgtttgatcaagtagggaaattttcaattgcagaaaggcaagctctggttcgtctgtagcatctgttcatggtgctgtactagcttt |
24464104 |
T |
|
| Q |
225 |
ggtagcatctgtattatcagccccatatgacatgcccaggtttgtccaaca |
275 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24464103 |
ggtagcttctgtattatcagccccatatgacatgcccaggtttgtccaaca |
24464053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 24464339 - 24464240
Alignment:
| Q |
16 |
aatattatgtaagatgtaggctcgactgcattgtgtatagggtgggatttgcaaacatgatatttatttgtcaattgaccagctaatatgatcatcttgc |
115 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |
|
|
| T |
24464339 |
aatattatttaacatgtaggctggactgcattgtgtatagggtgggatttgcaaacatgatttatttttgtcaattgaccagctaatatgatcatcttgc |
24464240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University