View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_65 (Length: 298)
Name: NF17716_high_65
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 2950111 - 2950031
Alignment:
| Q |
17 |
tgtggctattgatgaccacctaaagtataggacnnnnnnntgttacaataacgtacatacattaaacgcatgcatgatttt |
97 |
Q |
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| T |
2950111 |
tgtggctattgatgaccacctaaagtataggacaaaaaaatgttacaataacgtacatacattaaacgcatgcatgatttt |
2950031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 2949987 - 2949929
Alignment:
| Q |
116 |
gtttatactaaagaagaccttaa---catctatgcataaattaaattactatatagtca |
171 |
Q |
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| T |
2949987 |
gtttgtactagagaagaccttaataacatctatgcataaattaaattactatatagtca |
2949929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 282
Target Start/End: Complemental strand, 2949849 - 2949818
Alignment:
| Q |
251 |
gatctaaatcgtggttccgtccaggaagaaaa |
282 |
Q |
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| T |
2949849 |
gatctaaatcgtggttccgtccaggaagaaaa |
2949818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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