View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_high_66 (Length: 291)

Name: NF17716_high_66
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_high_66
NF17716_high_66
[»] chr1 (6 HSPs)
chr1 (181-252)||(29359857-29359928)
chr1 (185-249)||(49020295-49020359)
chr1 (181-233)||(49570110-49570162)
chr1 (185-251)||(30745104-30745170)
chr1 (185-251)||(30766555-30766621)
chr1 (181-209)||(8454609-8454637)
[»] chr8 (6 HSPs)
chr8 (181-252)||(41639684-41639755)
chr8 (181-251)||(35067274-35067344)
chr8 (185-254)||(39453201-39453270)
chr8 (181-250)||(6440195-6440264)
chr8 (181-250)||(5574369-5574438)
chr8 (184-212)||(13971033-13971061)
[»] chr2 (5 HSPs)
chr2 (171-253)||(7084600-7084682)
chr2 (181-254)||(43658596-43658669)
chr2 (179-212)||(36774650-36774683)
chr2 (181-211)||(18737801-18737831)
chr2 (171-212)||(33616571-33616612)
[»] chr4 (4 HSPs)
chr4 (185-254)||(16019594-16019663)
chr4 (174-251)||(47015112-47015189)
chr4 (185-254)||(34757793-34757862)
chr4 (185-254)||(34759067-34759136)
[»] chr3 (7 HSPs)
chr3 (181-254)||(36755935-36756008)
chr3 (181-250)||(43720492-43720561)
chr3 (181-252)||(1436930-1437001)
chr3 (181-252)||(51698972-51699043)
chr3 (181-252)||(33796380-33796451)
chr3 (181-212)||(19150246-19150277)
chr3 (171-212)||(48353100-48353141)
[»] chr7 (4 HSPs)
chr7 (185-248)||(35822865-35822928)
chr7 (185-256)||(41430034-41430105)
chr7 (171-212)||(47954028-47954069)
chr7 (171-211)||(47012497-47012537)
[»] chr5 (7 HSPs)
chr5 (181-252)||(16690613-16690684)
chr5 (181-236)||(26686992-26687047)
chr5 (181-236)||(26956723-26956778)
chr5 (11-53)||(26686824-26686866)
chr5 (11-53)||(26956555-26956597)
chr5 (182-243)||(34940748-34940809)
chr5 (181-251)||(38493739-38493809)
[»] scaffold0662 (1 HSPs)
scaffold0662 (174-251)||(1251-1328)


Alignment Details
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 29359857 - 29359928
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctct 252  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||| ||||||||    
T  29359857 atacttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattgatgttcaaataacattgctct 29359928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 49020359 - 49020295
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgc 249  Q
    |||||||| ||||||||||||||||||  ||||| |||| |||||| ||||| |||||| |||||    
T  49020359 ttttctttgtaaaaatatggttgtcaatttggttgtcaaccaaattgatgttcaaataaaattgc 49020295  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 49570110 - 49570162
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaat 233  Q
    ||||||||||||||||||||||||||||||| ||| || |||| |||| ||||    
T  49570110 atacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaaataat 49570162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 30745104 - 30745170
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctc 251  Q
    |||||||| ||| | |||||||||| |  ||||| ||||||||||||||||| |||||| |||||||    
T  30745104 ttttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttcaaataacattgctc 30745170  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 30766555 - 30766621
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctc 251  Q
    |||||||| ||| | |||||||||| |  ||||| ||||||||||||||||| |||||| |||||||    
T  30766555 ttttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttcaaataacattgctc 30766621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 8454637 - 8454609
Alignment:
Q  181 atacttttctttataaaaatatggttgtc 209  Q
    |||||||||||||||||||||||||||||    
T  8454637 atacttttctttataaaaatatggttgtc 8454609  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 41639755 - 41639684
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctct 252  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||||||    
T  41639755 atacttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataacattgctct 41639684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 35067274 - 35067344
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctc 251  Q
    |||||||||||| |||||||||||||||||| |||||| |||| |||||| ||||| |||||| |||||||    
T  35067274 atacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataacattgctc 35067344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 39453270 - 39453201
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctcttt 254  Q
    |||||||| |||||||||| ||||||| |||||| ||||||||||| ||||| |||||| ||||||||||    
T  39453270 ttttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataacattgctcttt 39453201  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 6440195 - 6440264
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgct 250  Q
    |||||||||||| ||||||||||||||||||  ||||| |||| ||| || ||||| |||||| ||||||    
T  6440195 atacttttctttgtaaaaatatggttgtcaatttggttgtcaaccaagttgatgttcaaataacattgct 6440264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 5574369 - 5574438
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgct 250  Q
    |||||||||||| ||||||||||| ||||||  | ||| |||| |||||| ||||| |||||| ||||||    
T  5574369 atacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaattgatgttcaaataacattgct 5574438  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 13971033 - 13971061
Alignment:
Q  184 cttttctttataaaaatatggttgtcaac 212  Q
    |||||||||||||||||||||||||||||    
T  13971033 cttttctttataaaaatatggttgtcaac 13971061  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 7084682 - 7084600
Alignment:
Q  171 gtaccaaaagatacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctctt 253  Q
    ||||||| | |||||||||||| |||||||||| ||||||| |||||| |||| |||||| ||||| |||||| |||||||||    
T  7084682 gtaccaacacatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataacattgctctt 7084600  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 43658669 - 43658596
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctcttt 254  Q
    |||||||||||| |||||| || ||||||||  ||||| |||| |||||||||||| |||||| ||||||||||    
T  43658669 atacttttctttgtaaaaaaatagttgtcaatatggttgtcaaccaaattaatgttcaaataacattgctcttt 43658596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 36774650 - 36774683
Alignment:
Q  179 agatacttttctttataaaaatatggttgtcaac 212  Q
    ||||||||||||||||||||||||||||||||||    
T  36774650 agatacttttctttataaaaatatggttgtcaac 36774683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 211
Target Start/End: Complemental strand, 18737831 - 18737801
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaa 211  Q
    |||||||||||||||||||||||||||||||    
T  18737831 atacttttctttataaaaatatggttgtcaa 18737801  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 33616571 - 33616612
Alignment:
Q  171 gtaccaaaagatacttttctttataaaaatatggttgtcaac 212  Q
    ||||||| | |||||||||||| |||||||||||||||||||    
T  33616571 gtaccaacacatacttttctttgtaaaaatatggttgtcaac 33616612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 16019594 - 16019663
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctcttt 254  Q
    |||||||||||||||||||||||||||  || || ||||||||||| ||||| |||||| ||||||||||    
T  16019594 ttttctttataaaaatatggttgtcaatatgcttgtcaatcaaattgatgttcaaataacattgctcttt 16019663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 47015112 - 47015189
Alignment:
Q  174 ccaaaagatacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctc 251  Q
    |||| |||||||||||||| |||||||||| ||||||| |||||| |||| |||| | ||||| |||||| |||||||    
T  47015112 ccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataacattgctc 47015189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 34757862 - 34757793
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctcttt 254  Q
    |||||||| |||||||||| ||||||  ||| || ||||||||||| || || |||||| ||||||||||    
T  34757862 ttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatatttaaataacattgctcttt 34757793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 34759136 - 34759067
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctcttt 254  Q
    |||||||| |||||||||| ||||||  ||| || ||||||||||| || || |||||| ||||||||||    
T  34759136 ttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatatttaaataacattgctcttt 34759067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 36756008 - 36755935
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctcttt 254  Q
    |||||||||||| |||||||||||||||||| ||| || ||||||||||| || || |||||| ||||||||||    
T  36756008 atacttttctttgtaaaaatatggttgtcaatgtgattgtcaatcaaattgatattcaaataacattgctcttt 36755935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 43720492 - 43720561
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgct 250  Q
    ||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||| ||| || ||||||    
T  43720492 atacttttctttataaaaatatgattgtcaatgtggttgtcaaccaaattaatgttcaaagaacattgct 43720561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 1436930 - 1437001
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctct 252  Q
    |||||||||||| |||||||||||||||||| |||||| | || |||||| ||||| |||||| ||||||||    
T  1436930 atacttttctttgtaaaaatatggttgtcaatgtggttgtaaaccaaattgatgttcaaataacattgctct 1437001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 51698972 - 51699043
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctct 252  Q
    |||||||||||| ||| |||||||||||||| |||||| |||| |||||| ||||| |||||| ||||||||    
T  51698972 atacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataacattgctct 51699043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 33796380 - 33796451
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctct 252  Q
    ||||||||||||||||||||||||||||||| ||| || |||| |||||| || || |||||| ||| ||||    
T  33796380 atacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaattgattttcaaataacattactct 33796451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 19150277 - 19150246
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaac 212  Q
    ||||||||||||||||||||||||||||||||    
T  19150277 atacttttctttataaaaatatggttgtcaac 19150246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 48353100 - 48353141
Alignment:
Q  171 gtaccaaaagatacttttctttataaaaatatggttgtcaac 212  Q
    ||||||| | ||||||||||||||||||||||| ||||||||    
T  48353100 gtaccaacacatacttttctttataaaaatatgattgtcaac 48353141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 35822928 - 35822865
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattg 248  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||    
T  35822928 ttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataacattg 35822865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 41430105 - 41430034
Alignment:
Q  185 ttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctctttat 256  Q
    |||||||| |||||| ||||||||| | |||||| ||||||| ||| ||||| |||||| ||||||||||||    
T  41430105 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataacattgctctttat 41430034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 47954069 - 47954028
Alignment:
Q  171 gtaccaaaagatacttttctttataaaaatatggttgtcaac 212  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  47954069 gtaccaacacatacttttctttataaaaatatggttgtcaac 47954028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 47012537 - 47012497
Alignment:
Q  171 gtaccaaaagatacttttctttataaaaatatggttgtcaa 211  Q
    ||||||| | |||||||||||| ||||||||||||||||||    
T  47012537 gtaccaacatatacttttctttgtaaaaatatggttgtcaa 47012497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 16690613 - 16690684
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctct 252  Q
    |||||||||||| |||||||||||||||||| |||||| |||| |||||| || || |||||| ||||||||    
T  16690613 atacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatattcaaataacattgctct 16690684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 26686992 - 26687047
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgtt 236  Q
    |||||||||||| |||||||||||||||||| || ||| |||||||||||||||||    
T  26686992 atacttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26687047  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 26956723 - 26956778
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgtt 236  Q
    |||||||||||| |||||||||||||||||| || ||| |||||||||||||||||    
T  26956723 atacttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26956778  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 26686824 - 26686866
Alignment:
Q  11 gtgagatgaaaactggagagatataattttaaactgtagtgag 53  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  26686824 gtgacatgaaaactggagagatataattttaaactgtagtgag 26686866  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 26956555 - 26956597
Alignment:
Q  11 gtgagatgaaaactggagagatataattttaaactgtagtgag 53  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  26956555 gtgacatgaaaactggagagatataattttaaactgtagtgag 26956597  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 34940748 - 34940809
Alignment:
Q  182 tacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataa 243  Q
    |||||||||||||||||||||| ||||||| |||||| |||| |||||| ||||| ||||||    
T  34940748 tacttttctttataaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataa 34940809  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 38493739 - 38493809
Alignment:
Q  181 atacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctc 251  Q
    |||||||||||| | ||||||||| |||||| |||||| |||| |||||| ||||| |||||| |||||||    
T  38493739 atacttttctttgttaaaatatgggtgtcaatgtggttgtcaaccaaattgatgttcaaataacattgctc 38493809  T

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Target: scaffold0662 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 1251 - 1328
Alignment:
Q  174 ccaaaagatacttttctttataaaaatatggttgtcaacgtggttatcaatcaaattaatgttgaaataagattgctc 251  Q
    |||| |||||||||||||| |||||||||| ||||||| |||||| |||| |||| | ||||| |||||| |||||||    
T  1251 ccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataacattgctc 1328  T

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