View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_69 (Length: 279)
Name: NF17716_high_69
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 52549293 - 52549229
Alignment:
| Q |
10 |
ataattctgtctcaggcaaggaaatgtgatttaaatatatttgtatgattgtattcctattttaa |
74 |
Q |
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| T |
52549293 |
ataattctgtctcaggcaaggaaatgtgatttaaatatatttgtataattgtattcctattttaa |
52549229 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 52549164 - 52549112
Alignment:
| Q |
139 |
ctagaaaggtttaagctggccaattacattattgcagcaataatgatcataat |
191 |
Q |
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| T |
52549164 |
ctagaaaggtttaagctggccaattacattattgcagtaataatgatcataat |
52549112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 17125401 - 17125434
Alignment:
| Q |
232 |
aatgagtatggaccagtggagtgggaaattggtg |
265 |
Q |
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| T |
17125401 |
aatgagtatggaccagtggaatgggaaattggtg |
17125434 |
T |
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