View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_71 (Length: 262)
Name: NF17716_high_71
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 39292138 - 39291909
Alignment:
| Q |
18 |
aggaatatatagcaagaataattaagatgagatgtggtggtttgaaaaactttcctttcaacgaatgaactcgaaatatcaatctaggattcaagttaaa |
117 |
Q |
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| T |
39292138 |
aggaatatatagcaagaataattaagatgagatgtggtggtttgaaaaactttcctttcaaggaatgaactcgaaatatcaatctaggattcaagttaaa |
39292039 |
T |
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| Q |
118 |
gatcctttaggggctcttagttaataagtttaagatcacaagtctgagtttgttgtacaagaaatgtattttcgatgtagaaaacaataaataatatgaa |
217 |
Q |
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| T |
39292038 |
gatcctttaggggctcttagttgataagtttaagatcacaagtcgaagtttgttgtacaagaaatgtattttcgatgtagaaaataataaataatatgaa |
39291939 |
T |
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| Q |
218 |
aattgtattattatatatgtgagttacata |
247 |
Q |
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| T |
39291938 |
aattgtattattatatatgtgagttacata |
39291909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 41106470 - 41106525
Alignment:
| Q |
62 |
aaaaactttcctttcaacgaatgaactcgaaatatcaatctaggattcaagttaaa |
117 |
Q |
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| T |
41106470 |
aaaatctttcctttcaacaaatgaactcgaaacatcaatataggatttaagttaaa |
41106525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 560957 - 560867
Alignment:
| Q |
59 |
ttgaaaaactttcctttcaacgaatgaactcgaaatatcaatctaggattcaagttaaagatcctttaggggc-tcttagttaataagtttaa |
150 |
Q |
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| T |
560957 |
ttgaaaatgtttcccttcaacaaatgaactcgacatatcaatctatgattcgagtt--acatccttaagaggcttcttagttgataagtttaa |
560867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 2221349 - 2221393
Alignment:
| Q |
71 |
cctttcaacgaatgaactcgaaatatcaatctaggattcaagtta |
115 |
Q |
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| T |
2221349 |
ccttccaacaaatgaactcgaaaaatcaatctaagattcaagtta |
2221393 |
T |
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