View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_81 (Length: 239)
Name: NF17716_high_81
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_81 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 20132674 - 20132475
Alignment:
| Q |
17 |
cataggaaccggcaactgtattggaagaacgaccgacatcaccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtcc |
116 |
Q |
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| T |
20132674 |
cataggaaccggcaactgtattggaagaacgaccgacatcaccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtcc |
20132575 |
T |
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| Q |
117 |
aatcaagatgttattggctttaatatctctgtggactataggaggaacacagtcatgatgcagatatgcaagtccttctgcagaacctagcagaattcgg |
216 |
Q |
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| T |
20132574 |
aatcaagatgttattggctttaatatctctgtggactataggaggaacacagtcatgatgtagatatgcaagtccttctgcagaacctaacagaattcgg |
20132475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 21468650 - 21468535
Alignment:
| Q |
58 |
ccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtccaatcaagatgttattggctttaatatctctgtggactatag |
157 |
Q |
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| T |
21468650 |
ccatcatcaacaagtttcgcaagtccaaaatcagctatgtatggttcaaattcaagacctatgaggatgttgttggccttaatatctctgtgaacaatag |
21468551 |
T |
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| Q |
158 |
gaggaacacagtcatg |
173 |
Q |
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| T |
21468550 |
gaggagcacaatcatg |
21468535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 4196840 - 4196759
Alignment:
| Q |
120 |
caagatgttattggctttaatatctctgtggactataggaggaacacagtcatgatgcagatatgcaagtccttctgcagaa |
201 |
Q |
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| T |
4196840 |
caagatgttattagatttaacatctctatgaacaataggaggaacacagtcatgatgcagataagagaggccttctgcagaa |
4196759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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