View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_83 (Length: 238)
Name: NF17716_high_83
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_83 |
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Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 7880331 - 7880221
Alignment:
| Q |
104 |
tatcttcataatataatatatagtccatatgcaaaagtagcatatgtgaaaatataacctta------ggctccaccttccaatgtcatgcaaagtaatg |
197 |
Q |
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| T |
7880331 |
tatcttcatattatactatatagtccatatgcaaaagtagcatctgtaaaaatatagcctcaataaaaggctccaccttccaatgccatgcaaagtaatg |
7880232 |
T |
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| Q |
198 |
aaattagaaag |
208 |
Q |
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| T |
7880231 |
aaattagaaag |
7880221 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 7881245 - 7881188
Alignment:
| Q |
17 |
agttcaagggaagataactgaattttaaggttggcctcgaccacatcttgggatgtag |
74 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7881245 |
agttcaggggaagataactgaattttaaggttggcctcgaccacatcttgggaagtag |
7881188 |
T |
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