View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_84 (Length: 237)
Name: NF17716_high_84
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_84 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 20132651 - 20132866
Alignment:
| Q |
1 |
ccaatacagttgccggttcctatggttatatcgctccaggttagtgtgcctgcacatgattgaaatcacactttacatctttcaacacgttttattgaat |
100 |
Q |
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| T |
20132651 |
ccaatacagttgccggttcctatggttatatcgctccaggttagtgtgcctacacatgattgaaatcacactttacatctttcaacacttattattgtat |
20132750 |
T |
|
| Q |
101 |
ttatttcatatacaccatcagtgtaaagatttcttattctgtc-aatcaatcataaccatcaggattcagatgcctaaaatgtttgattttaaccatatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
20132751 |
ttatttcatatacaccatcagtgtaaagatttcttactcactcaaatcaatcataacca-----attcagatgcttaaaatgtttgattttaaccatatt |
20132845 |
T |
|
| Q |
200 |
tacttctaaagttctacatat |
220 |
Q |
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|||||||||||| |||||||| |
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| T |
20132846 |
tacttctaaagtcctacatat |
20132866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 5661945 - 5661890
Alignment:
| Q |
100 |
tttatttcatatacaccatcagtgtaaagatttcttattctgtcaatcaatcataa |
155 |
Q |
| |
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|||| ||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |
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| T |
5661945 |
tttaattcatatacactatcagtggaaagattttttacactgtcaatcaatcataa |
5661890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 29117894 - 29117947
Alignment:
| Q |
98 |
aatttatttcatatacaccatcagtgtaaagatttcttattctgtcaatcaatc |
151 |
Q |
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| T |
29117894 |
aatttatttcatatacactatcagtgtaaatattttttagattgtcaatcaatc |
29117947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 8960958 - 8961006
Alignment:
| Q |
105 |
ttcatatacaccatcagtgtaaagatttcttattctgtcaatcaatcat |
153 |
Q |
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|||||||| | ||||||||||||||||| ||| ||||||||||||||| |
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| T |
8960958 |
ttcatatatatcatcagtgtaaagattttttacactgtcaatcaatcat |
8961006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 7601494 - 7601444
Alignment:
| Q |
105 |
ttcatatacaccatcagtgtaaagatttcttattctgtcaatcaatcataa |
155 |
Q |
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|||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
7601494 |
ttcatatacattatcagtgtaaagattttttacactgtcaatcaatcataa |
7601444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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