View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_87 (Length: 235)
Name: NF17716_high_87
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_87 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 41584404 - 41584614
Alignment:
| Q |
18 |
aagttagtctacgctttctctttgaagtgcattgcttagacaggaaaaactaaaattttggaaaattgatctcgaagagatggacagagatataaaggct |
117 |
Q |
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| T |
41584404 |
aagttagtctacgctttctctttgaagtgcattgcttagacaggaaaaactaaaattttggaaaattgatctcgaagagatggacagagatataaaggct |
41584503 |
T |
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| Q |
118 |
cacctgat--acacacacacaagctgtattcaataaaacatatatgctttgcagcaaatgatctcagtgtccttgttctgcatatcaattttcggctttg |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41584504 |
cacctgatacacacacacacaagctgtattcaataaaacatatatgctttgcagcaaatgatctcagtgtccttgttctgcatattaattttcggctttg |
41584603 |
T |
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| Q |
216 |
atattttcttc |
226 |
Q |
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||||||||||| |
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| T |
41584604 |
atattttcttc |
41584614 |
T |
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