View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_88 (Length: 235)
Name: NF17716_high_88
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_88 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 35254363 - 35254449
Alignment:
| Q |
132 |
tcatcactaacttttctaagcttcaattcaattcacaaaaatgaagatatcgttgcagaattattccaattccaaagcaggaacaat |
218 |
Q |
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| T |
35254363 |
tcatcactaacttttctaagcttcaattcaattcacaaaaatgaagatatcgttgcagaattattccaattccaaagcaggaacaat |
35254449 |
T |
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Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 35254249 - 35254334
Alignment:
| Q |
18 |
ataagagtaattaactaacggtggagtgacgttgaagtagagagttgagaggttagttggaaatgtaaattgaagcaattcagtac |
103 |
Q |
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| T |
35254249 |
ataagagcaattaactaacggtggagtgacgttgaagtagagagttgagaggttagttggaaatgtaaattgaagcaattcagtac |
35254334 |
T |
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