View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_high_89 (Length: 230)

Name: NF17716_high_89

Description: NF17716

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17716_high_89

[»] chr5 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 193; E-Value: 1e-105

Query Start/End: Original strand, 22 - 214

Target Start/End: Original strand, 34387491 - 34387683

Alignment:

Q	22	gaaaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaacattctcgtcttcattcgaattggaaatttcattgttaatttgtg	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34387491	gaaaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaacattctcgtcttcattcgaattggaaatttcattgttaatttgtg	34387590	T

Q	122	gtgattcacaaggcaattcatgtcgacaaacgggacaagaattttgaattgcaagccatggaagtatgcattcattatggtatatgtgtttgc	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34387591	gtgattcacaaggcaattcatgtcgacaaacgggacaagaattttgaattgcaagccatggaagtatgcattcattatggtatatgtgtttgc	34387683	T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 24 - 77

Target Start/End: Original strand, 41697403 - 41697456

Alignment:

Q	24	aaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaac	77	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|
T	41697403	aaatcttccaacagcaaatccacctcccggtaacctccatattgtcaatccaac	41697456	T

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