View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_high_93 (Length: 216)
Name: NF17716_high_93
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_high_93 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 51705948 - 51705740
Alignment:
| Q |
1 |
gtaggttccttgaataaagcagtccttgaaaaaatgtttgccatagtcatcacacaaggtatcttgaaatccgatgaacttgcagttgtagaatgcagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705948 |
gtaggttccttgaataaagcagtccttgaaaaaatgtttgccatagtcatcacacaaggtatcttgaaatccgatgaacttgcagttgtagaatgcagcc |
51705849 |
T |
|
| Q |
101 |
ttatcccctgatatcctcatcgctaatgcttgtcctccaacactattttcgtccggcataggagacgagttctgcacatatacacacaaataaatatata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51705848 |
ttatcccctgatatcctcatcgctaatgcttgtcctccaacactattttcgtccggcataggagacgagttctgcacatatacatacaaataaatatata |
51705749 |
T |
|
| Q |
201 |
atattcttc |
209 |
Q |
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||| ||||| |
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| T |
51705748 |
ataatcttc |
51705740 |
T |
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