View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_high_97 (Length: 203)

Name: NF17716_high_97
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_high_97
NF17716_high_97
[»] chr3 (27 HSPs)
chr3 (13-185)||(19767831-19768003)
chr3 (19-131)||(17593537-17593648)
chr3 (39-132)||(17601544-17601636)
chr3 (40-132)||(15417671-15417762)
chr3 (46-132)||(103583-103668)
chr3 (19-132)||(10813168-10813280)
chr3 (50-130)||(8368446-8368526)
chr3 (19-130)||(10816064-10816174)
chr3 (46-132)||(94731-94816)
chr3 (47-132)||(26900766-26900850)
chr3 (86-131)||(38700029-38700074)
chr3 (50-130)||(10777052-10777131)
chr3 (47-130)||(18556524-18556606)
chr3 (47-130)||(26907370-26907452)
chr3 (84-132)||(8854288-8854336)
chr3 (90-130)||(16091696-16091736)
chr3 (90-130)||(16082520-16082560)
chr3 (80-130)||(51199114-51199165)
chr3 (84-130)||(8857126-8857172)
chr3 (150-187)||(45456460-45456497)
chr3 (80-132)||(10497496-10497548)
chr3 (19-130)||(14789885-14789996)
chr3 (85-135)||(11134248-11134298)
chr3 (85-135)||(19777526-19777576)
chr3 (103-132)||(8854477-8854506)
chr3 (85-130)||(19808627-19808672)
chr3 (46-130)||(14566447-14566530)
[»] scaffold0123 (1 HSPs)
scaffold0123 (13-130)||(11032-11149)
[»] chr7 (11 HSPs)
chr7 (19-132)||(11100004-11100116)
chr7 (46-130)||(23532700-23532784)
chr7 (80-132)||(43173647-43173699)
chr7 (50-132)||(23522473-23522555)
chr7 (80-131)||(44356862-44356913)
chr7 (90-130)||(44359984-44360024)
chr7 (50-132)||(11544588-11544669)
chr7 (77-131)||(15942439-15942492)
chr7 (82-134)||(357655-357707)
chr7 (82-132)||(362384-362434)
chr7 (50-132)||(11527184-11527265)
[»] chr6 (22 HSPs)
chr6 (27-132)||(13727842-13727946)
chr6 (19-132)||(17997009-17997121)
chr6 (38-130)||(25969985-25970076)
chr6 (38-130)||(25974425-25974516)
chr6 (68-135)||(22467389-22467456)
chr6 (47-132)||(16688412-16688497)
chr6 (47-132)||(19011841-19011925)
chr6 (130-185)||(22082640-22082696)
chr6 (47-132)||(8667946-8668030)
chr6 (47-124)||(16666142-16666219)
chr6 (68-130)||(19008724-19008786)
chr6 (80-126)||(19573884-19573930)
chr6 (47-132)||(19019472-19019556)
chr6 (90-131)||(19577521-19577562)
chr6 (19-132)||(20090634-20090746)
chr6 (68-132)||(18929622-18929686)
chr6 (76-130)||(8649918-8649972)
chr6 (90-130)||(11225837-11225877)
chr6 (85-132)||(4279752-4279799)
chr6 (82-132)||(11694578-11694628)
chr6 (68-126)||(23607228-23607286)
chr6 (85-130)||(4283034-4283079)
[»] chr2 (13 HSPs)
chr2 (19-132)||(23696377-23696489)
chr2 (19-130)||(3071468-3071578)
chr2 (39-132)||(23692590-23692682)
chr2 (76-132)||(5771732-5771788)
chr2 (76-132)||(26120829-26120885)
chr2 (76-132)||(26126291-26126347)
chr2 (68-130)||(29603991-29604053)
chr2 (76-132)||(7311091-7311147)
chr2 (76-130)||(45278810-45278864)
chr2 (76-130)||(45286109-45286163)
chr2 (82-126)||(17932932-17932976)
chr2 (88-132)||(4876642-4876686)
chr2 (80-132)||(30558590-30558642)
[»] chr5 (12 HSPs)
chr5 (19-130)||(40933064-40933173)
chr5 (19-132)||(40936457-40936568)
chr5 (50-132)||(26857631-26857713)
chr5 (50-130)||(26863864-26863944)
chr5 (46-132)||(8460024-8460109)
chr5 (76-132)||(38840531-38840587)
chr5 (80-130)||(19049917-19049967)
chr5 (76-130)||(38836614-38836668)
chr5 (131-185)||(40164751-40164806)
chr5 (81-132)||(32965631-32965682)
chr5 (80-130)||(20817269-20817319)
chr5 (98-132)||(38840360-38840394)
[»] scaffold0320 (1 HSPs)
scaffold0320 (26-130)||(11884-11987)
[»] chr8 (19 HSPs)
chr8 (19-130)||(21935959-21936069)
chr8 (50-132)||(21408226-21408308)
chr8 (50-132)||(21802718-21802800)
chr8 (50-132)||(21834679-21834761)
chr8 (19-132)||(21938467-21938579)
chr8 (80-130)||(14366000-14366050)
chr8 (76-130)||(14673223-14673277)
chr8 (76-132)||(36281508-36281564)
chr8 (47-130)||(3299960-3300042)
chr8 (80-131)||(20135158-20135209)
chr8 (90-130)||(14369580-14369620)
chr8 (90-130)||(14370131-14370171)
chr8 (90-130)||(20132044-20132084)
chr8 (90-132)||(14676429-14676471)
chr8 (47-132)||(3303024-3303108)
chr8 (82-130)||(31708764-31708812)
chr8 (88-132)||(31710982-31711026)
chr8 (88-130)||(16907177-16907219)
chr8 (98-132)||(36281701-36281735)
[»] chr1 (16 HSPs)
chr1 (26-133)||(18433046-18433152)
chr1 (50-132)||(19751601-19751682)
chr1 (46-132)||(24277019-24277104)
chr1 (50-131)||(19749376-19749456)
chr1 (73-130)||(15158283-15158340)
chr1 (83-132)||(20435457-20435506)
chr1 (80-132)||(20514226-20514278)
chr1 (47-132)||(15142832-15142916)
chr1 (46-131)||(24281132-24281216)
chr1 (90-130)||(20442358-20442398)
chr1 (46-130)||(36910661-36910744)
chr1 (150-187)||(6921612-6921649)
chr1 (150-187)||(38238229-38238266)
chr1 (50-132)||(12020419-12020500)
chr1 (82-130)||(555660-555708)
chr1 (96-132)||(15154589-15154625)
[»] scaffold0139 (1 HSPs)
scaffold0139 (27-132)||(3072-3176)
[»] scaffold0071 (1 HSPs)
scaffold0071 (40-132)||(44476-44567)
[»] scaffold0167 (1 HSPs)
scaffold0167 (32-131)||(10629-10727)
[»] scaffold0037 (1 HSPs)
scaffold0037 (26-132)||(20709-20814)
[»] scaffold0130 (2 HSPs)
scaffold0130 (76-139)||(19198-19261)
scaffold0130 (76-121)||(15199-15244)
[»] chr4 (9 HSPs)
chr4 (39-132)||(27788906-27788998)
chr4 (134-185)||(37617279-37617331)
chr4 (82-132)||(10757099-10757149)
chr4 (82-132)||(10970270-10970320)
chr4 (82-130)||(10754824-10754872)
chr4 (82-130)||(10968593-10968641)
chr4 (19-129)||(23882218-23882327)
chr4 (96-133)||(23878566-23878603)
chr4 (82-130)||(29724941-29724989)
[»] scaffold0202 (2 HSPs)
scaffold0202 (76-132)||(10590-10646)
scaffold0202 (76-130)||(14077-14131)
[»] scaffold0208 (1 HSPs)
scaffold0208 (46-133)||(1702-1788)
[»] scaffold0074 (1 HSPs)
scaffold0074 (47-130)||(56359-56441)
[»] scaffold0023 (2 HSPs)
scaffold0023 (80-131)||(146536-146587)
scaffold0023 (90-130)||(149735-149775)
[»] scaffold0001 (1 HSPs)
scaffold0001 (83-130)||(150975-151022)
[»] scaffold1505 (1 HSPs)
scaffold1505 (76-130)||(630-684)
[»] scaffold0179 (2 HSPs)
scaffold0179 (81-130)||(24705-24754)
scaffold0179 (81-135)||(27349-27403)
[»] scaffold0878 (2 HSPs)
scaffold0878 (88-132)||(1688-1732)
scaffold0878 (88-132)||(4100-4144)
[»] scaffold0443 (1 HSPs)
scaffold0443 (90-130)||(6522-6562)
[»] scaffold0369 (1 HSPs)
scaffold0369 (88-132)||(7409-7453)
[»] scaffold0018 (1 HSPs)
scaffold0018 (88-131)||(194454-194497)
[»] scaffold0045 (1 HSPs)
scaffold0045 (90-130)||(78529-78569)
[»] scaffold2018 (1 HSPs)
scaffold2018 (85-132)||(930-977)
[»] scaffold0009 (1 HSPs)
scaffold0009 (103-135)||(72347-72379)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 19767831 - 19768003
Alignment:
Q  13 atgaacaatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttag 112  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19767831 atgaacaatgtgcgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttag 19767930  T
Q  113 gaatattatgacggtccacaacctataactcaaaaactatttagcatgatattttatgttgagaatgtgtctt 185  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19767931 aaatattatgacggtccacaacctataactcaaaaactatttagcatgatattttatgttcagaatgtgtctt 19768003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 17593648 - 17593537
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| ||||| |||||  |||||||||| |||||||||||| | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  17593648 aatgcgcgcccggggcccttgggcttcttttaagggtgttaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaggaatat 17593550  T
Q  119 tatgacggtccac 131  Q
    |||||||||||||    
T  17593549 tatgacggtccac 17593537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 17601636 - 17601544
Alignment:
Q  39 gggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||||| |||||||||||| | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17601636 gggcttcttttaagggtgttaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 17601544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 15417762 - 15417671
Alignment:
Q  40 ggcttctttcaagggtgttaag-actttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||| |||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15417762 ggcttcttttaagggtgttaaggactgt-ttgagggatctaaaa-gcccttttggaggtctttcagttccttaggaatattatgacggtccaca 15417671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 103583 - 103668
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||||| |||| |||| ||||| | ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  103583 tttcaagggtgctaaggctttcttgagaggtctaagaagcccttttggaggtcttt-aagtccttaggaatattatgacggtccaca 103668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 10813168 - 10813280
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtcc-ttaggaata 117  Q
    |||||| |||||||||||| || ||||||| |||||||||||  | || ||||||| ||||||| ||||||||||||||||||||||||| ||| |||||    
T  10813168 aatgcgcgcccgaggcccatgg-cttcttttaagggtgttaaagccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtcctttaagaata 10813265  T
Q  118 ttatgacggtccaca 132  Q
    |||| ||||||||||    
T  10813266 ttataacggtccaca 10813280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 8368446 - 8368526
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||| |||| | || ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  8368446 aagggtgctaaggccttcttgaggggtctaagaagcccttttgaaggtctttcaggtccttaggaatattataacggtcca 8368526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 10816064 - 10816174
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtcc-ttaggaata 117  Q
    |||||| |||||||||||| || ||||||| |||||||||||| | || ||||||| ||||||| ||| ||||||||||||||||||||| ||| |||||    
T  10816064 aatgcgcgcccgaggcccatgg-cttcttttaagggtgttaaggccttcttgaggggtctaaaa-gccattttggaggtctttcaggtcctttaagaata 10816161  T
Q  118 ttatgacggtcca 130  Q
    |||| ||||||||    
T  10816162 ttataacggtcca 10816174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 94731 - 94816
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||||| |||| | || ||||| | ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  94731 tttcaagggtgctaaggccttcttgagaggtctaagaagcccttttggaggtcttt-aagtccttaggaatattatgacggtccaca 94816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 26900766 - 26900850
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||| | |||| | || ||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  26900766 ttcaagggcgctaagccctttttgaggg-tctaagaagcccttttggaggtctcttaggtccttaggaatattatgacggtccaca 26900850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 38700074 - 38700029
Alignment:
Q  86 ccttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38700074 ccttttggaggtctttcaggtccttaggaatattatgacggtccac 38700029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 10777052 - 10777131
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||| | || ||||| | ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10777052 aagggtgttaaggccttcttgagaggtctaagaagcccttttggaggttttt-aggtccttaggaatattatgacggtcca 10777131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 18556606 - 18556524
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||| | |||| | || ||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  18556606 ttcaagggcgctaagccctttttgaggg-tctaagaagcccttttggaggtcttttaggtccataggaatattatgacggtcca 18556524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 26907370 - 26907452
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||| | |||| | || ||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  26907370 ttcaagggcgctaagccctttttgaggg-tctaagaagcccttttggaggtctcttaggtccttaggaatattatgacggtcca 26907452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 8854288 - 8854336
Alignment:
Q  84 gcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  8854288 gcccttttgaaggtcttttaggtccttaggaatattatgacggtccaca 8854336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 16091736 - 16091696
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16091736 ttggaggtctttcaggtccttaggaatattatgacggtcca 16091696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 16082560 - 16082520
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  16082560 ttggaggtctttcaggtccttaggaatattataacggtcca 16082520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 51199165 - 51199114
Alignment:
Q  80 aaaagcccttt-tggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  51199165 aaaagccctttctggagatcttttaggtccttaggaatattatgacggtcca 51199114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 8857126 - 8857172
Alignment:
Q  84 gcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  8857126 gcccttttgaaggtcttttaggtccttaggaatattgtgacggtcca 8857172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 45456497 - 45456460
Alignment:
Q  150 tatttagcatgatattttatgttgagaatgtgtctttg 187  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  45456497 tatttagcatgatattttatgttgagaatgtatctttg 45456460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 10497548 - 10497496
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||||||||||||| ||||||| ||||||||  ||||||||||||    
T  10497548 aaaagcctttttggaggtcttttaggtcctcaggaatatattgacggtccaca 10497496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 14789885 - 14789996
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgaggga-tctaaaaagcccttttggaggtctttcaggtccttaggaata 117  Q
    |||||| ||||| |||||  |||| ||||| |||||||||||||| || |||||||  |||| || ||||||  | |||||||| | |||||||||||||    
T  14789885 aatgcgcgcccggggcccttgggcctcttttaagggtgttaagaccttcttgagggggtctagaa-gcccttccgaaggtctttaaagtccttaggaata 14789983  T
Q  118 ttatgacggtcca 130  Q
     ||||||||||||    
T  14789984 atatgacggtcca 14789996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 11134248 - 11134298
Alignment:
Q  85 cccttttggaggtctttcaggtccttaggaatattatgacggtccacaacc 135  Q
    ||||| |||||| |||| | | |||||||||||||||||||||||||||||    
T  11134248 cccttctggagggcttttaagcccttaggaatattatgacggtccacaacc 11134298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 19777526 - 19777576
Alignment:
Q  85 cccttttggaggtctttcaggtccttaggaatattatgacggtccacaacc 135  Q
    ||||| |||||| |||| | | |||||||||||||||||||||||||||||    
T  19777526 cccttctggagggcttttaagcccttaggaatattatgacggtccacaacc 19777576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 8854477 - 8854506
Alignment:
Q  103 aggtccttaggaatattatgacggtccaca 132  Q
    ||||||||||||||||||||||||||||||    
T  8854477 aggtccttaggaatattatgacggtccaca 8854506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 19808627 - 19808672
Alignment:
Q  85 cccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||| |||||| | ||||||||||||||||||||||||    
T  19808627 cccttctggagggctttcaagcccttaggaatattatgacggtcca 19808672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 14566447 - 14566530
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||||| |||| | || ||||| | ||||| |||||| ||| ||||||||| | ||| ||||||||||| ||||||||||    
T  14566447 tttcaagggtgctaaggccttcttgagaggtctaagaagcccctttagaggtcttt-aagtctttaggaatattgtgacggtcca 14566530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 11032 - 11149
Alignment:
Q  13 atgaacaatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttag 112  Q
    ||||| |||||| | ||||||| ||||||||||||| ||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||    
T  11032 atgaataatgcgcgtccgaggctcaagggcttcttttaagggcgttaagaccttcttgaggggtctaaaaagcccttttggaggtctttcaggtccttag 11131  T
Q  113 gaatattatgacggtcca 130  Q
    ||||||||||||||||||    
T  11132 gaatattatgacggtcca 11149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 9e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 11100116 - 11100004
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| ||||| |||||  |||||||||| |||||||||||| | || ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  11100116 aatgcgcgcccggggcccttgggcttcttttaagggtgttaaggccttcttgaggggtctaaaaa-cccttttggaggtctttcaggtccttaggaatat 11100018  T
Q  119 tatgacggtccaca 132  Q
    ||||||||||||||    
T  11100017 tatgacggtccaca 11100004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 23532700 - 23532784
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||||| |||| | || ||||||| |||||  ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  23532700 tttcaagggtgctaaggccttcttgaggggtctaagcagcccttttggaggtcttttaagtccttaggaatattatgacggtcca 23532784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 43173647 - 43173699
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43173647 aaaagcccttttggaggtctttcaggtccttaagaatattatgacggtccaca 43173699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 23522473 - 23522555
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||||| ||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  23522473 aagggtgctaaggccttcttgaggggtctaagaagcccttttggaggtcttttgagtccttaggaatattatgacggtccaca 23522555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 44356913 - 44356862
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  44356913 aaaagtccttttggaggtctttcaggtccttaggaatattatgacagtccac 44356862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 44360024 - 44359984
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44360024 ttggaggtctttcaggtccttaggaatattatgacggtcca 44359984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 11544669 - 11544588
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||| | ||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  11544669 aagggtgctaaggccttcttgagaggtctaagaagcccttttggaggtctttaag-tccttaggaattttatgacggtccaca 11544588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 15942439 - 15942492
Alignment:
Q  77 ctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  15942439 ctaagaagcccttttggaggttttt-aggtccttaggaatattatgacggtccac 15942492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 357655 - 357707
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtccacaac 134  Q
    ||||||||||||||| ||||   | ||||||||||||||||||||||||||||    
T  357655 aagcccttttggagggcttttgagcccttaggaatattatgacggtccacaac 357707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 362384 - 362434
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||||||||| ||||   | ||||||||||||||||||||||||||    
T  362384 aagcccttttggagggcttttgagcccttaggaatattatgacggtccaca 362434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 11527265 - 11527184
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||| | ||||| |||||||||||| ||||||| || ||||||||||| |||||||| ||||||    
T  11527265 aagggtgctaaggccttcttgagaggtctaagaagcccttttgggggtctttaag-tccttaggaattttatgacgatccaca 11527184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 9e-32; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 13727842 - 13727946
Alignment:
Q  27 cccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacgg 126  Q
    |||| ||||| ||||||||||| |||||||||||| | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13727842 cccggggccctagggcttcttttaagggtgttaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaggaatattatgacgg 13727940  T
Q  127 tccaca 132  Q
    ||||||    
T  13727941 tccaca 13727946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 17997009 - 17997121
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| ||||| |||||  |||||||||| |||||||||||| | || ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  17997009 aatgcgcgcccggggcccttgggcttcttttaagggtgttaaggccttcttgaggggtctaaaaa-cccttttggaggtctttcaggtccttaggaatat 17997107  T
Q  119 tatgacggtccaca 132  Q
    ||||||||||||||    
T  17997108 tatgacggtccaca 17997121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 25970076 - 25969985
Alignment:
Q  38 agggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||| ||| |||||||||||| | || ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  25970076 agggcttttttgaagggtgttaaggccttcttgaggggtctaaaa-gcctttttggaggtctttcaggtccttaggaatattatgacggtcca 25969985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 25974516 - 25974425
Alignment:
Q  38 agggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||| ||| |||||||||||| | || ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  25974516 agggcttttttgaagggtgttaaggccttcttgaggggtctaaaa-gcctttttggaggtctttcaggtccttaggaatattatgacggtcca 25974425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 22467456 - 22467389
Alignment:
Q  68 ttgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccacaacc 135  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  22467456 ttgagggatctaagaagcccttttggaggtcttttaggtccttaagaatattatgacagtccacaacc 22467389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 16688497 - 16688412
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||||||||| | || ||||| | |  || |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16688497 ttcaagggtgttaagcccttcttgagaggttcaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 16688412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 19011841 - 19011925
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||| | |||| | || ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19011841 ttcaagggcgctaagccctttttgaggg-tctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 19011925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 22082640 - 22082696
Alignment:
Q  130 acaacctataactcaaaaa-ctatttagcatgatattttatgttgagaatgtgtctt 185  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22082640 acaacctataactcaaaaagctatttagcatgatattttatgttgagaatgtgtctt 22082696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 8668030 - 8667946
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||| | |||| | || ||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  8668030 ttcaagggcgctaagccctttttgaggg-tctaagaagcccttttggaggtctcttaggtccttaggaatattatgacggtccaca 8667946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 16666219 - 16666142
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgac 124  Q
    ||||||||||||||| | || ||||| | || || |||||||||||||||||||| ||||||||||||||||||||||    
T  16666219 ttcaagggtgttaagcccttcttgagaggtccaagaagcccttttggaggtcttttaggtccttaggaatattatgac 16666142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 19008724 - 19008786
Alignment:
Q  68 ttgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||| ||||  ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  19008724 ttgaggggtctaggaagcccttttgaaggtcttttaggtccttaggaatattatgacggtcca 19008786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 19573884 - 19573930
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacgg 126  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  19573884 aaaagtccttttggaggtctttcaggtccttaggaatattatgacgg 19573930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 19019472 - 19019556
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||| | |||| | || ||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  19019472 ttcaagggcgctaagccctttttgaggg-tctaagaagcccttttggaggtcttttaggtccataggaatattatgacagtccaca 19019556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 19577521 - 19577562
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19577521 ttggaggtctttcaggtccttaggaatattatgacggtccac 19577562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 20090634 - 20090746
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| ||||| ||||  ||||||||||| ||||||| |||  | || ||||| | ||| ||| ||| |||  ||||||||||||||||||||||||||    
T  20090634 aatgcgcgcccgtggccttagggcttcttttaagggtgctaaagccttcttgagaggtcttaaa-gccttttgagaggtctttcaggtccttaggaatat 20090732  T
Q  119 tatgacggtccaca 132  Q
    ||||||||||||||    
T  20090733 tatgacggtccaca 20090746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 18929622 - 18929686
Alignment:
Q  68 ttgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| ||||  ||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  18929622 ttgaggggtctaggaagcccttttgaagatcttttaggtccttaggaatattatgacggtccaca 18929686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 8649972 - 8649918
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||||||||||||||| | |||||||||| |||||||||||||||||    
T  8649972 tctaagaagcccttttggaggtctcttaggtccttagaaatattatgacggtcca 8649918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 11225877 - 11225837
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11225877 ttggaggtctttcaagtccttaggaatattatgacggtcca 11225837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 4279752 - 4279799
Alignment:
Q  85 cccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||| |||| | ||||||||||||||||||||||||||||    
T  4279752 cccttctggagggcttttaagtccttaggaatattatgacggtccaca 4279799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 11694628 - 11694578
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||| |||||| |||| | | ||||||||||||||||||||||||||    
T  11694628 aagcccttctggagggcttttaagcccttaggaatattatgacggtccaca 11694578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 23607228 - 23607286
Alignment:
Q  68 ttgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacgg 126  Q
    ||||||| ||||  || |||||||| |||||||| |||| |||||||||||||||||||    
T  23607228 ttgaggggtctaggaaacccttttgaaggtcttttaggttcttaggaatattatgacgg 23607286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 4283034 - 4283079
Alignment:
Q  85 cccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||| |||| | ||||||||||||||||||||||||||    
T  4283034 cccttctggagggcttttaagtccttaggaatattatgacggtcca 4283079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 9e-32; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 23696489 - 23696377
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||||||||| |||||  |||||||||| ||| |||||||| | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  23696489 aatgcgtgcccggggcccttgggcttcttttaagagtgttaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaggaatat 23696391  T
Q  119 tatgacggtccaca 132  Q
    ||||||||||||||    
T  23696390 tatgacggtccaca 23696377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 3071578 - 3071468
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| ||||| ||||| ||||||||||| |||||||||||| | || ||||||| ||||||| ||||||||||||||||||||||||||||||||||     
T  3071578 aatgcgcgcccggggccctagggcttcttttaagggtgttaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaggaatac 3071480  T
Q  119 tatgacggtcca 130  Q
    ||||||||||||    
T  3071479 tatgacggtcca 3071468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 23692682 - 23692590
Alignment:
Q  39 gggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||||| |||||||||||| | || ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23692682 gggcttcttttaagggtgttaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaagaatattatgacggtccaca 23692590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 5771788 - 5771732
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5771788 tctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 5771732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 26120829 - 26120885
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26120829 tctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 26120885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 26126291 - 26126347
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26126291 tctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 26126347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 29603991 - 29604053
Alignment:
Q  68 ttgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29603991 ttgaggggtataagaagcccttttggaggtcttttaggtccttaggaatattatgacggtcca 29604053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 7311091 - 7311147
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  7311091 tctaagaagcccttttggaggtcttttaggtccataggaatattatgacggtccaca 7311147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 45278864 - 45278810
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  45278864 tctaagaagcccttttggaggtcttttaggtccttaggaatattatcacggtcca 45278810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 45286163 - 45286109
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  45286163 tctaagaagcccttttggaggtcttttaggtccttaggaatattatcacggtcca 45286109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 17932932 - 17932976
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacgg 126  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  17932932 aagcccttttggaggtcttttaggtccataggaatattatgacgg 17932976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 4876686 - 4876642
Alignment:
Q  88 ttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||    
T  4876686 ttttagaggtccttcaggtccttaggaatattatgatggtccaca 4876642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 30558590 - 30558642
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||  |||| |||||||||||  ||||||||||||    
T  30558590 aaaagtccttttggaggtcttctaggttcttaggaatatattgacggtccaca 30558642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 3e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 40933173 - 40933064
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| |||||||||||| || ||||||| |||||||||||| | || ||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  40933173 aatgcgcgcccgaggcccatgg-cttcttttaagggtgttaaggccttcttgaggggtctaaaa-gcccttttgaaggtctttcaggtccttaggaatat 40933076  T
Q  119 tatgacggtcca 130  Q
    ||||||||||||    
T  40933075 tatgacggtcca 40933064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 40936568 - 40936457
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| |||||||||||| || ||||||| |||||||||||| | || ||||| | ||||||| ||||||||| |||||||||||||||||||||||||    
T  40936568 aatgcgcgcccgaggcccatgg-cttcttttaagggtgttaaggccttcttgagaggtctaaaa-gcccttttgaaggtctttcaggtccttaggaatat 40936471  T
Q  119 tatgacggtccaca 132  Q
    ||||||||||||||    
T  40936470 tatgacggtccaca 40936457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 26857631 - 26857713
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26857631 aagggtgctaaggccttcttgaggggtctaagaagcccttttggaggtctttcagttccttaggaatattatgacggtccaca 26857713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 26863864 - 26863944
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||| |||| | || |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26863864 aagggtgctaaggccttcttgaagggtctaagaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 26863944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 8460109 - 8460024
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||||| |||||| || ||||| | ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  8460109 tttcaagggtgctaagaccttcttgagaggtctaagaagcccttttggaggtcttt-aagtccttaggaatattatgacggtccaca 8460024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 38840587 - 38840531
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  38840587 tctaagaagcccttttggaggtcttttagatccttaggaatattatgacggtccaca 38840531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 19049917 - 19049967
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19049917 aaaatcccttttggaggtcttttaggtccttaggaatattatgacggtcca 19049967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 38836668 - 38836614
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||||||||||    
T  38836668 tctaagaagcccttttggaggtcttttagatccttaggaatattatgacggtcca 38836614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 40164751 - 40164806
Alignment:
Q  131 caacctataactcaaaaact-atttagcatgatattttatgttgagaatgtgtctt 185  Q
    |||||||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  40164751 caacctataactcaaaaagttatttagcatgatattttatgttgataatgtgtctt 40164806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 32965682 - 32965631
Alignment:
Q  81 aaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||| |||| |||||| ||||||| |||||||||||||||||||||||||    
T  32965682 aaagccattttagaggtccttcaggttcttaggaatattatgacggtccaca 32965631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 20817319 - 20817269
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||| ||||| ||||||||||||||||||||||  ||||||||||    
T  20817319 aaaagcccttctggagatctttcaggtccttaggaatatattgacggtcca 20817269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 38840394 - 38840360
Alignment:
Q  98 ctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  38840394 cttttaggtccttaggaatattatgacggtccaca 38840360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 11987 - 11884
Alignment:
Q  26 gcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacg 125  Q
    ||||| ||||| |||||||| || ||||||||| |||| || ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  11987 gcccggggccctagggcttcctttaagggtgtttagaccttcttgaggggtctaaaa-gccctttttgaggtctttcaggtccttaggaatattatgacg 11889  T
Q  126 gtcca 130  Q
    |||||    
T  11888 gtcca 11884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 8e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 21936069 - 21935959
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||||||||| |||||  |||||||||| || ||| ||||| | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  21936069 aatgcgtgcccggggcccttgggcttcttttaaaggtattaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaggaatat 21935971  T
Q  119 tatgacggtcca 130  Q
    |||||| |||||    
T  21935970 tatgacagtcca 21935959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 21408308 - 21408226
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21408308 aagggtgctaaggcctttttgaggggtctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 21408226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 21802800 - 21802718
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21802800 aagggtgctaaggcctttttgaggggtctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 21802718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 21834761 - 21834679
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21834761 aagggtgctaaggcctttttgaggggtctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 21834679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 21938579 - 21938467
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| ||||| |||||  ||| |||||| || ||| ||||| | || ||||||| ||||||| |||||||||||||||||||||||||||||||| ||    
T  21938579 aatgcgcgcccggggcccttgggattcttttaaaggtattaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaggaacat 21938481  T
Q  119 tatgacggtccaca 132  Q
    ||||||||||||||    
T  21938480 tatgacggtccaca 21938467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 14366050 - 14366000
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14366050 aaaagtccttttggaggtctttcaggtccttaggaatattatgacggtcca 14366000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 14673277 - 14673223
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14673277 tctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtcca 14673223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 36281508 - 36281564
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  36281508 tctaagaagcccttttggaggtcttttagatccttaggaatattatgacggtccaca 36281564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 3300042 - 3299960
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||| | |||| | || ||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  3300042 ttcaagggcgctaagccctttttgaggg-tctaagaagcccttttggaggtcttttaggtccataggaatattatgacggtcca 3299960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 20135158 - 20135209
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  20135158 aaaagtccttttggaggtctttcaggtccttaggaatattatgacagtccac 20135209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 14369620 - 14369580
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14369620 ttggaggtctttcaggtccttaggaatattatgacggtcca 14369580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 14370171 - 14370131
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14370171 ttggaggtctttcaggtccttaggaatattatgacggtcca 14370131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 20132044 - 20132084
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20132044 ttggaggtctttcaggtccttaggaatattatgacggtcca 20132084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 14676471 - 14676429
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  14676471 ttggaggtcttttaggtccttaggaatattatgacggtccaca 14676429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 3303108 - 3303024
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||| | |||| | || ||||||| ||||| ||||||||||||| |||||| |||||| || ||||||||||||||||||||    
T  3303108 ttcaagggcgctaagccctttttgaggg-tctaagaagcccttttggaagtcttttaggtccatatgaatattatgacggtccaca 3303024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 31708812 - 31708764
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  31708812 aagcctttttagaggtccttcaggtccttaggaatattatgacggtcca 31708764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 31711026 - 31710982
Alignment:
Q  88 ttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||    
T  31711026 ttttagaggtccttcaggtccttaggaatattatgatggtccaca 31710982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 16907177 - 16907219
Alignment:
Q  88 ttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||| |||||| |||| ||||||||||||||||||||||||||    
T  16907177 ttttagaggtccttcaagtccttaggaatattatgacggtcca 16907219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 36281701 - 36281735
Alignment:
Q  98 ctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  36281701 cttttaggtccttaggaatattatgacggtccaca 36281735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 8e-26; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 18433152 - 18433046
Alignment:
Q  26 gcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacg 125  Q
    ||||| |||||  |||||||||| || ||| ||||| | || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18433152 gcccggggcccttgggcttcttttaaaggtattaaggccttcttgaggggtctaaaa-gcccttttggaggtctttcaggtccttaggaatattatgacg 18433054  T
Q  126 gtccacaa 133  Q
    ||||||||    
T  18433053 gtccacaa 18433046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 19751682 - 19751601
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19751682 aagggtgctaaggccttcttgaggggtctaagaagcc-ttttggaggtctttcaggtccttaggaatattatgacggtccaca 19751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 24277019 - 24277104
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||||| |||| | || ||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  24277019 tttcaagggtgctaaggccttcttgagagatctaagaagcccttttggaggtcttt-aagtccttaggaatattatgacggtccaca 24277104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 19749456 - 19749376
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    ||||||| |||| | || ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19749456 aagggtgctaaggccttcttgaggggtctaagaagcc-ttttggaggtctttcaggtccttaggaatattatgacggtccac 19749376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 15158283 - 15158340
Alignment:
Q  73 ggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  15158283 ggatctaagaagcccttttggaggtcttttaggtccataggaatattatgacggtcca 15158340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 20435457 - 20435506
Alignment:
Q  83 agcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20435457 agcccttttggaggtcttttaggtccttaggaatattatgacggtccaca 20435506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 20514278 - 20514226
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  20514278 aaaagtccttttggaggtcttttaggtccttaggaatattatgacggtccaca 20514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 15142832 - 15142916
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||| | |||| | || ||||||| ||||| || ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  15142832 ttcaagggcgctaagccctttttgaggg-tctaagaatcccttttggaggtcttttaggtccataggaatattatgacggtccaca 15142916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 24281132 - 24281216
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    ||||||||||| |||| | || ||||| | ||||| || ||||||||||||||||| || ||||||||||||||||||||||||||    
T  24281132 tttcaagggtgctaaggccttcttgagaggtctaagaaacccttttggaggtctttaag-tccttaggaatattatgacggtccac 24281216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 20442398 - 20442358
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20442398 ttggaggtctttcaggtccttaggaatattatgacggtcca 20442358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 36910661 - 36910744
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||||| |||  | || ||||| | ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  36910661 tttcaagggtgctaaagcctttttgagaggtctaagaagcccttttggaggtctttaaggt-cttaggaatattatgacggtcca 36910744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 6921612 - 6921649
Alignment:
Q  150 tatttagcatgatattttatgttgagaatgtgtctttg 187  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6921612 tatttagcatgatattttatgttgagaatgtgtctttg 6921649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 38238266 - 38238229
Alignment:
Q  150 tatttagcatgatattttatgttgagaatgtgtctttg 187  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38238266 tatttagcatgatattttatgttgagaatgtgtctttg 38238229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 12020419 - 12020500
Alignment:
Q  50 aagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||| |||| | || ||||| | ||||| |||||||||||||||||||  || ||||||||||| |||||||||||||||    
T  12020419 aagggtgctaaggccttcttgagaggtctaagaagcccttttggaggtcttaaag-tccttaggaattttatgacggtccaca 12020500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 555660 - 555708
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||| |||||| |||| | | ||||||||||||||||||||||||    
T  555660 aagcccttctggagggcttttaagcccttaggaatattatgacggtcca 555708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 15154589 - 15154625
Alignment:
Q  96 gtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||| |||||| |||||||||||||||||||||||    
T  15154589 gtcttttaggtccataggaatattatgacggtccaca 15154625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 3072 - 3176
Alignment:
Q  27 cccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacgg 126  Q
    |||||||||| ||||||||||| |||||| ||||| | || ||||||| ||||||| ||||||||| | ||| |||||||||||||||||||||||||||    
T  3072 cccgaggccctagggcttcttttaagggttttaaggccttcttgaggggtctaaaa-gcccttttgaaagtccttcaggtccttaggaatattatgacgg 3170  T
Q  127 tccaca 132  Q
    ||||||    
T  3171 tccaca 3176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 44476 - 44567
Alignment:
Q  40 ggcttctttcaagggtgttaag-actttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||||||| |||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44476 ggcttcttttaagggtgttaaggactgt-ttgagggatctaaaa-gcccttttggaggtctttcagttccttaggaatattatgacggtccaca 44567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 10629 - 10727
Alignment:
Q  32 ggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    ||||| |||||||| || ||||||||| |||| || ||||||| ||||||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10629 ggccctagggcttcctttaagggtgtttagaccttcttgaggggtctaaac-gcccttttggaggtcttttaggtccttaggaatattatgacggtccac 10727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 20709 - 20814
Alignment:
Q  26 gcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacg 125  Q
    ||||| |||||  |||||||||| || ||| ||||| | || |||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  20709 gcccggggcccttgggcttcttttaaaggtattaaggccttcttgaagggtctaaaa-gcccttgtggaggtctttcaggtccttaggaatattatgacg 20807  T
Q  126 gtccaca 132  Q
    |||||||    
T  20808 gtccaca 20814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 19198 - 19261
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccacaacctata 139  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  19198 tctaagaagcccttttggaggtcttttaggtccttaggaatattatgacggtccaaaaactata 19261  T

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Target: scaffold0130; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 15199 - 15244
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattat 121  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||    
T  15199 tctaagaagcccttttggaggtcttttaggtccttaggaatattat 15244  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 27788998 - 27788906
Alignment:
Q  39 gggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||||| |||| |||| || | || |||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  27788998 gggcttcttttaaggatgtttaggccttcttgagggaactaaat-gcccttttggaggcctttcaggtccttaggaatattatgacggttcaca 27788906  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 37617331 - 37617279
Alignment:
Q  134 cctataactcaaaaa-ctatttagcatgatattttatgttgagaatgtgtctt 185  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37617331 cctataactcaaaaagctatttagcatgatattttatgttgagaatgtgtctt 37617279  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 10757149 - 10757099
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||||||  ||||||| ||||| ||||||||||||||||||||||||    
T  10757149 aagcccttttgagggtcttttaggtctttaggaatattatgacggtccaca 10757099  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 10970320 - 10970270
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||||||||||  ||||||| ||||| ||||||||||||||||||||||||    
T  10970320 aagcccttttgagggtcttttaggtctttaggaatattatgacggtccaca 10970270  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 10754872 - 10754824
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||  ||||||| ||||||||||||||||||| ||||||||    
T  10754872 aagcccttttgagggtcttttaggtccttaggaatattataacggtcca 10754824  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 10968641 - 10968593
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||  ||||||| ||||||||||||||||||| ||||||||    
T  10968641 aagcccttttgagggtcttttaggtccttaggaatattataacggtcca 10968593  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 23882327 - 23882218
Alignment:
Q  19 aatgcgtgcccgaggcccaagggcttctttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatat 118  Q
    |||||| ||||| |||||  |||| ||||| || ||| ||||| | || ||||||| |||| |  ||||||  |||||||||| ||||| ||||||||||    
T  23882327 aatgcgcgcccggggcccttgggcctcttttaatggtattaaggccttcttgaggggtctagac-gcccttccggaggtctttaaggtctttaggaatat 23882229  T
Q  119 tatgacggtcc 129  Q
    |||||||||||    
T  23882228 tatgacggtcc 23882218  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 23878603 - 23878566
Alignment:
Q  96 gtctttcaggtccttaggaatattatgacggtccacaa 133  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  23878603 gtctttaaggtctttaggaatattatgacggtccacaa 23878566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 29724941 - 29724989
Alignment:
Q  82 aagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||| |||||| |||| | | ||||||||||||||||||||||||    
T  29724941 aagcccttctggagggcttttaagcccttaggaatattatgacggtcca 29724989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 10590 - 10646
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10590 tctaagaagcccttttggaggtctcttaggtccttaggaatattatgacggtccaca 10646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 14077 - 14131
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  14077 tctaagaagcccttttggaggtctcttaggtccttaggaatattatgacggtcca 14131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 1702 - 1788
Alignment:
Q  46 tttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccacaa 133  Q
    ||||||||||||| || | || ||||| | ||||  |||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  1702 tttcaagggtgttgaggccttcttgagaggtctaggaagcccttttggaggtctttaag-tccttaggaatattatgacggtccacaa 1788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 56441 - 56359
Alignment:
Q  47 ttcaagggtgttaagactttattgagggatctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||| | |||| | || ||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  56441 ttcaagggcgctaagccgtttttgaggg-tctaagaaacccttttggaggtcttttaggtccttaggaatattatgacggtcca 56359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 146587 - 146536
Alignment:
Q  80 aaaagcccttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  146587 aaaagtccttttggaggtctttcaggtccttaggaatattatgacagtccac 146536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 149775 - 149735
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  149775 ttggaggtctttcaggtccttaggaatattatgacagtcca 149735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 150975 - 151022
Alignment:
Q  83 agcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  150975 agcccttttggaggtccttcaggtccttaggaatattatgacggtcca 151022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 630 - 684
Alignment:
Q  76 tctaaaaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  630 tctaagaagcccttttggaggtcctttaggtccttaggaatattatgacggtcca 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 24754 - 24705
Alignment:
Q  81 aaagcccttttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  24754 aaagcccttttagaggtccttcaggtccttaggaatattatgacggtcca 24705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 27403 - 27349
Alignment:
Q  81 aaagcccttttggaggtctttcaggtccttaggaatattatgacggtccacaacc 135  Q
    ||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||    
T  27403 aaagctcttttagaggtccttcaggtcctcaggaatattatgacggtccacaacc 27349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 1732 - 1688
Alignment:
Q  88 ttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  1732 ttttagaggtccttcaggtccttaggaatattatgacggtccaca 1688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 4144 - 4100
Alignment:
Q  88 ttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  4144 ttttagaggtccttcaggtccttaggaatattatgacggtccaca 4100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 6522 - 6562
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  6522 ttggaggtctttcaggtccttaggaatattatgactgtcca 6562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 7453 - 7409
Alignment:
Q  88 ttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  7453 ttttagaggtccttcaggtccttaggaatattatgacggtccaca 7409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 194497 - 194454
Alignment:
Q  88 ttttggaggtctttcaggtccttaggaatattatgacggtccac 131  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  194497 ttttagaggtccttcaggtccttaggaatattatgacggtccac 194454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 78569 - 78529
Alignment:
Q  90 ttggaggtctttcaggtccttaggaatattatgacggtcca 130  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  78569 ttggaggtccttcaggtccttaggaataatatgacggtcca 78529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2018 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold2018
Description:

Target: scaffold2018; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 977 - 930
Alignment:
Q  85 cccttttggaggtctttcaggtccttaggaatattatgacggtccaca 132  Q
    ||||| |||||| |||| | ||||||||||||||||||||||||||||    
T  977 cccttctggagggcttttaagtccttaggaatattatgacggtccaca 930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 72347 - 72379
Alignment:
Q  103 aggtccttaggaatattatgacggtccacaacc 135  Q
    ||||| |||||||||||||||||||||||||||    
T  72347 aggtctttaggaatattatgacggtccacaacc 72379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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