View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_1 (Length: 936)
Name: NF17716_low_1
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_1 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 266 - 936
Target Start/End: Original strand, 46680293 - 46680950
Alignment:
| Q |
266 |
ttatatttgttcgacaaattaacttgagatatattttataatttcttaaatttcttgcatatgttgtagattnnnnnnntagtttttgtttattaaatta |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| | || ||| || |
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| T |
46680293 |
ttatatttgttcgacaaattaacttgagatatattttataatttcttaaatttctggcatatgttgtagattaaaaaaatattttataattctta---ta |
46680389 |
T |
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| Q |
366 |
tactcttaaacttttgatcccttttggtttgccttataataccaaaaccaagtaactctgaaccagtctttggaccatagcagagacgacataatataat |
465 |
Q |
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| T |
46680390 |
tactctgaaacttttgatcccttttggtttgccttataataccaaaaccaagtaactctgaaccagtctttggaccatagcagagacgacataatataat |
46680489 |
T |
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| Q |
466 |
attgaaggcatgcgcgcatctttgac---gaaagtttgagacacagtcaacatcatatatccatgccatactctgcaatgcaatctaaaaactcctataa |
562 |
Q |
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| T |
46680490 |
attgaaggcacgcgcgcatctttgactgagacagtttgagacacagtcaacatcatatatccatgccatactctccaatgcaatctaaaaactcctataa |
46680589 |
T |
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| Q |
563 |
atacaattttatagtacaatgc-----aatctaacaaaccaactaaatcctactaccttgctttcataaatatttctatttctgcaacaaattaatattc |
657 |
Q |
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| T |
46680590 |
atacaattttatagtagaatgcaatctaatctaacaaaccaactaaatcctactaccttgctttcataaatatttctatttctgcaacaaattaatattc |
46680689 |
T |
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| Q |
658 |
at--aaactttcagctttaattctctggcattccacataataacctgaccaaacttcaacttaattcccaaacatatatttgatggagagaacacaatca |
755 |
Q |
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| T |
46680690 |
ataaaaactttcagctttaattc--------------------cctgaccaaacttcaacttaattcccaaacatatatttgatggagagaacacaatca |
46680769 |
T |
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| Q |
756 |
tcacttctacagattcagcctcctacctatggaaacttagtgactatactaagcattgatggtggcggcattaggggaattattcccgcaactatcctcg |
855 |
Q |
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| T |
46680770 |
tcacttctacagattcagcctcctacctatggcaacttagtaactatactaagcattgatggtggcggcattaggggaattattcccgcaactatcctcg |
46680869 |
T |
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| Q |
856 |
agttccttgaatcgcaacttcaagaattagatggtgaatctgctaggcttgcagattactttgatgtgattacaggaacaa |
936 |
Q |
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| T |
46680870 |
agttccttgaatcgcaacttcaagaattagacggtgaatctgctaggcttgcagattactttgatgtgattacaggaacaa |
46680950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 46680088 - 46680301
Alignment:
| Q |
18 |
tgatttgaccacaatatcatcaaagaaatcatgaaaaaacaaattccctgcactttgatatgcagcccc-cctacatttgaaccatttaatgctgacggc |
116 |
Q |
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| T |
46680088 |
tgatttgaccacaatatcat-aaagaaatcatgaaaaaacaaattccctgcactttgatatgcagccccccctacatttgaaccatttaatgctgacggc |
46680186 |
T |
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| Q |
117 |
tattttaccatgagtttgatgtgcttaaaatgttaattttgggatgttaaccactatttggtgatttatactattaaaaattagtttagaccgataaatc |
216 |
Q |
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| T |
46680187 |
tattttaccatgagtttgatgtgcttaaaatgttaattttgggatgttaaccactatttggtgatttatactattaaaaattagtttagaccgataaatc |
46680286 |
T |
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| Q |
217 |
aaattcttatatttg |
231 |
Q |
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| T |
46680287 |
aaattcttatatttg |
46680301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 705 - 934
Target Start/End: Original strand, 46676737 - 46676966
Alignment:
| Q |
705 |
caaacttcaacttaattcccaaacatatatttgatggagagaacacaatcatcacttctacagattcagcctcctacctatggaaacttagtgactatac |
804 |
Q |
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| T |
46676737 |
caaacttcaacttaattcccaaacatatatttgatggagagaacacaatcatcacttctacaaattcagcctcctacctatgggaacttagtgactattc |
46676836 |
T |
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| Q |
805 |
taagcattgatggtggcggcattaggggaattattcccgcaactatcctcgagttccttgaatcgcaacttcaagaattagatggtgaatctgctaggct |
904 |
Q |
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| T |
46676837 |
taagcatcgacggtggtggtattaggggaattattccggcaactattctcgagttccttgaatcacaacttcaagaattagacggtgaatctgctaggct |
46676936 |
T |
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| Q |
905 |
tgcagattactttgatgtgattacaggaac |
934 |
Q |
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| T |
46676937 |
cgcagattactttgatgtgattacaggaac |
46676966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 897 - 936
Target Start/End: Complemental strand, 2649574 - 2649535
Alignment:
| Q |
897 |
gctaggcttgcagattactttgatgtgattacaggaacaa |
936 |
Q |
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| T |
2649574 |
gctaggcttgcaaattactttgatgtgattacaggaacaa |
2649535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 936
Target Start/End: Complemental strand, 6091163 - 6091112
Alignment:
| Q |
885 |
gatggtgaatctgctaggcttgcagattactttgatgtgattacaggaacaa |
936 |
Q |
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| T |
6091163 |
gatggtgaagatgcaaggcttgcagattactttgatgtgatctcaggaacaa |
6091112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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