View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17716_low_10 (Length: 554)
Name: NF17716_low_10
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_10 |
 | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 436
Target Start/End: Original strand, 14348412 - 14348848
Alignment:
| Q |
5 |
ggtaaataatactttatcattaattgtattatccaagaattgaattcagattcccgtaaataattattcctatgatgaaactcattaatcacttcaaatg |
104 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
14348412 |
ggtaaataaagctttatcattagttgtattattcaagaattgaattcagattcccataaataattattcctatgataaaacttattaatcgcttcaaatg |
14348511 |
T |
|
| Q |
105 |
aatcatttgattaggttgattaaacttttattgatttgatattattttcaatcttaacagactttaaaaatgaatcaagagccttaactcattttaacta |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14348512 |
aatcatttgattaggttgattaaacttttattgatttgatattatttccaatcttaacagactttaaaaatgaatcaagagccttaactcattttaacta |
14348611 |
T |
|
| Q |
205 |
ccaatgaatcatttgaattcatatccttttactcc-----catgttaaatcaacttaatttgcttggaagaaacaatgaaacggctcacaatacattaag |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14348612 |
ccaatgaataatttgaattcatatcctttcactccttttgtatgtgaaatcaacttaatttgcttggaagaaacaatgaaacggctcacaatacattaag |
14348711 |
T |
|
| Q |
300 |
tacgaagatcacaatttaatttgcttaggaggagacggtatataaacatacaaaacccagcaaacaaccacacacagcaacggtaaatattattcagatt |
399 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14348712 |
tacgaagatcacaatttaatttgattaggaggagacggtatacaaacatacacaacccagcaaacaaccacacacagcaactgtaaatattattcagatt |
14348811 |
T |
|
| Q |
400 |
aaagaggatagttattgtaagaagtaatttgatcact |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14348812 |
aaagaggatagttattgtaagaagtaatttgatcact |
14348848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 120 - 277
Target Start/End: Original strand, 14478714 - 14478876
Alignment:
| Q |
120 |
ttgattaaacttttattgatttgatattattttcaatcttaacagactttaaaaatgaatcaagagccttaactcattttaactaccaatgaatcatttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14478714 |
ttgattaaacttttattgatttgatattatttccaatgttaacagactttaaaaatgaatcaagagccttaactcattttaactaccaatgaatcatttg |
14478813 |
T |
|
| Q |
220 |
aattcatatccttttactcc-----catgttaaatcaacttaatttgcttggaagaaacaatg |
277 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14478814 |
aattcatatccttttactccttttgtatgtgaaatcaacttaatttgcttggaagaaacaatg |
14478876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 120 - 277
Target Start/End: Original strand, 11464 - 11626
Alignment:
| Q |
120 |
ttgattaaacttttattgatttgatattattttcaatcttaacagactttaaaaatgaatcaagagccttaactcattttaactaccaatgaatcatttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11464 |
ttgattaaacttttattgatttgatattatttccaatgttaacagactttaaaaatgaatcaagagccttaactcattttaactaccaatgaatcatttg |
11563 |
T |
|
| Q |
220 |
aattcatatccttttactcc-----catgttaaatcaacttaatttgcttggaagaaacaatg |
277 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11564 |
aattcatatccttttactccttttgtatgtgaaatcaacttaatttgcttggaagaaacaatg |
11626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University