View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_101 (Length: 227)

Name: NF17716_low_101
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_101
NF17716_low_101
[»] chr6 (3 HSPs)
chr6 (10-211)||(14316691-14316892)
chr6 (10-211)||(14248153-14248357)
chr6 (10-211)||(14253963-14254161)
[»] scaffold0902 (1 HSPs)
scaffold0902 (10-211)||(3209-3413)
[»] scaffold1652 (1 HSPs)
scaffold1652 (10-211)||(459-660)
[»] scaffold1176 (2 HSPs)
scaffold1176 (10-211)||(240-441)
scaffold1176 (152-211)||(1357-1416)
[»] scaffold1801 (1 HSPs)
scaffold1801 (10-211)||(124-337)
[»] chr4 (5 HSPs)
chr4 (12-124)||(37244886-37244998)
chr4 (15-79)||(37252947-37253011)
chr4 (10-85)||(37232696-37232771)
chr4 (10-80)||(37237611-37237681)
chr4 (10-80)||(37257067-37257137)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 14316691 - 14316892
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcgtcgttcgtggacgttgatggtgctattga 109  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  14316691 acatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgttcgtggacgttgatggtgctttaga 14316790  T
Q  110 aggagtggtagagatcgatgatggagtgatggaaggagtggctgcgggggaagcttgaggaggagatgactgagagttgatggcagacggtgaagtagaa 209  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  14316791 aggaggggtagagatcgatgatggagtgatggccggagtggctgcgggggaagcttgaggaggagatgatggagagttgatggcagacggtgaaatagaa 14316890  T
Q  210 gg 211  Q
    ||    
T  14316891 gg 14316892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 14248153 - 14248357
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcgtcg---ttcgtggacgttgatggtgctat 106  Q
    |||||||||||||||||   ||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||   || |||||||||||||||||| |    
T  14248153 acatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcggcgtttgtggacgttgatggtgcttt 14248252  T
Q  107 tgaaggagtggtagagatcgatgatggagtgatggaaggagtggctgcgggggaagcttgaggaggagatgactgagagttgatggcagacggtgaagta 206  Q
     || |||| |||||||||||  |||||||| || | |||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |    
T  14248253 agatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcttgaggaggagatgatggagagttgatggcagacggtgaagga 14248352  T
Q  207 gaagg 211  Q
    |||||    
T  14248353 gaagg 14248357  T

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Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 14253963 - 14254161
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcgtcgttcgtggacgttgatggtgctattga 109  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||| || | ||    
T  14253963 acatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgtttgtggacgttgatggtactttaga 14254062  T
Q  110 aggagtggtagagatcgatgatggagtgatggaaggagtggctgcgggggaagcttgaggaggagatgactgagagttgatggcagacggtgaagtagaa 209  Q
     |||| | |||||||||| |||||||| || | |||||| ||||| || |||||||||||||  | ||   |||||||||||||||||||||||| ||||    
T  14254063 tggagggatagagatcgacgatggagtaatagcaggagtagctgcaggtgaagcttgaggagatggtg---gagagttgatggcagacggtgaaggagaa 14254159  T

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Target: scaffold0902 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 3209 - 3413
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcgtc---gttcgtggacgttgatggtgctat 106  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||||||||||||||| | |   ||| ||| | |||||||||||| |    
T  3209 acatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggtgccagcgtttgtgaatgttgatggtgcttt 3308  T
Q  107 tgaaggagtggtagagatcgatgatggagtgatggaaggagtggctgcgggggaagcttgaggaggagatgactgagagttgatggcagacggtgaagta 206  Q
     || |||| |||||||||||  |||||||| |||| ||||| |||||| |||||||| |||||||||||||   |||||||||||||||||||||||| |    
T  3309 agatggaggggtagagatcgccgatggagtaatggcaggagcggctgctggggaagcatgaggaggagatggtggagagttgatggcagacggtgaagga 3408  T
Q  207 gaagg 211  Q
    |||||    
T  3409 gaagg 3413  T

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Target: scaffold1652 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 660 - 459
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcgtc---gttcgtggacgttgatggtgctat 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||| || | |   ||| |||||||||||||||||| |    
T  660 acatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggtggcagcgtttgtggacgttgatggtgcttt 561  T
Q  107 tgaaggagtggtagagatcgatgatggagtgatggaaggagtggctgcgggggaagcttgaggaggagatgactgagagttgatggcagacggtgaagta 206  Q
     || || | |||||||||||  |||||||| || | |||||||||||||||||||||||||||||  | ||   |||||||||||||||||||||||| |    
T  560 agatggtggggtagagatcgccgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtg---gagagttgatggcagacggtgaagga 464  T
Q  207 gaagg 211  Q
    |||||    
T  463 gaagg 459  T

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Target: scaffold1176 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 441 - 240
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcg---tcgttcgtggacgttgatggtgctat 106  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||  |||||||||||||||||||||   ||||| |||||||||||||||||| |    
T  441 acatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcgtcgtttgtggacgttgatggtgcttt 342  T
Q  107 tgaaggagtggtagagatcgatgatggagtgatggaaggagtggctgcgggggaagcttgaggaggagatgactgagagttgatggcagacggtgaagta 206  Q
     || |||| ||||||||| || |||||||| || | ||| |||||||||||||||||||||||||   |||    ||||||||||||||| ||||||| |    
T  341 agatggaggggtagagatggacgatggagtaatagcaggggtggctgcgggggaagcttgaggag---atggtctagagttgatggcagatggtgaagga 245  T
Q  207 gaagg 211  Q
    |||||    
T  244 gaagg 240  T

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Target: scaffold1176; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 1416 - 1357
Alignment:
Q  152 tgcgggggaagcttgaggaggagatgactgagagttgatggcagacggtgaagtagaagg 211  Q
    |||||||||||| |||||||||||||   || ||||||||||| ||||||||| ||||||    
T  1416 tgcgggggaagcatgaggaggagatggtggacagttgatggcacacggtgaaggagaagg 1357  T

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Target: scaffold1801 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 337 - 124
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcgtc---gttcgtggacgt---------tga 97  Q
    ||||||||||||||||||| ||||  ||| ||||||||||||||||||  ||||||||||||||||||||  |   ||| ||||| ||         |||    
T  337 acatcatcaaagcagcagttaaaaggacgacagcagcagatccggcaactgtaaatctgttcaaagcggcagcagcgtttgtggatgtctgtgatgttga 238  T
Q  98 tggtgctattgaaggagtggtagagatcgatgatggagtgatggaaggagtggctgcgggggaagcttgaggaggagatgactgagagttgatggcagac 197  Q
    || |||| | || |||| |||||||||||| |||||||| |||| |||||  ||||| || ||||| ||||||||||||    |||||||||||||||||    
T  237 tgatgctttagatggaggggtagagatcgacgatggagtaatggcaggagcagctgctggcgaagcatgaggaggagattgtggagagttgatggcagac 138  T
Q  198 ggtgaagtagaagg 211  Q
    ||||||| ||||||    
T  137 ggtgaaggagaagg 124  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 37244886 - 37244998
Alignment:
Q  12 atcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcgtcgttcgtggacgttgatggtgctattgaag 111  Q
    ||||||||| |||||| |||||||||  ||||||||||||||||||  || |||||||| ||||||||| |||| ||||| |||||||||| | | || |    
T  37244886 atcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgtttgtggatgttgatggtgatttagatg 37244985  T
Q  112 gagtggtagagat 124  Q
    ||| |||||||||    
T  37244986 gaggggtagagat 37244998  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 37252947 - 37253011
Alignment:
Q  15 atcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggc 79  Q
    |||||||| || | |||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  37252947 atcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggc 37253011  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 37232696 - 37232771
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcgtcgtt 85  Q
    ||||||||||||| |||| ||||| |||  |||||||||||||||||| ||| ||||| |||||||||||| ||||    
T  37232696 acatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtt 37232771  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 37237611 - 37237681
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcg 80  Q
    ||||||||||||| ||||  ||||| || |||||||||||| |||||| ||| ||||||||||| ||||||    
T  37237611 acatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcg 37237681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 37257067 - 37257137
Alignment:
Q  10 acatcatcaaagcagcagtgaaaaccacggcagcagcagatccggcaatggtaaatctgttcaaagcggcg 80  Q
    |||||||||||||||| | ||||||||   ||||||||||||| |||| ||| |||||||| |||||||||    
T  37257067 acatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcg 37257137  T

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