View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17716_low_103 (Length: 219)
Name: NF17716_low_103
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17716_low_103 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 18986102 - 18986308
Alignment:
| Q |
1 |
tttaccataacagaaaatttaaaatctgcccccac--cccgccatagtgtcgttgcggctgatatttgataacactactaagaaagcaacacctagattt |
98 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18986102 |
tttaccataacagaaaatttaaaatctgccaccacaacccgccatagtgtcgttgcggctgatatttgataacactactaagaaagcaacacctagattt |
18986201 |
T |
|
| Q |
99 |
cacgtttgattatgagaaaattcattcatatacctaattgcatatgcacataaatta-nnnnnnngctctagggaagtaactaactttaaatttatgtgc |
197 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
18986202 |
caggtttgattatgagaaaattcattcatatacctaattgcatatgcacataaattatttttgttgctctaggtaagtaactaactttaaatttatgtgc |
18986301 |
T |
|
| Q |
198 |
agagctg |
204 |
Q |
| |
|
||||||| |
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| T |
18986302 |
agagctg |
18986308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30343677 - 30343474
Alignment:
| Q |
1 |
tttaccataacagaaaatttaaaatctgcccccac--cccgccatagtgtcgttgcggctgatatttgataacactactaagaaagcaacacctagattt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30343677 |
tttaccataacagaaaatttaaaatctgccaccacaacccgccatagtgtcgttgcggctgatatttgataacactactaagaaagtaacacctagattt |
30343578 |
T |
|
| Q |
99 |
cacgtttgattatgagaaaattcattcatatacctaattgcatatgcacataaatta-nnnnnnngctctagggaagtaactaactttaaatttatgtgc |
197 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
30343577 |
caggtttgattatgagaaaattcattcatatacctaattgcatatgcacataaattattttttttgctctagggaagtaactaactttaaatttatgtgc |
30343478 |
T |
|
| Q |
198 |
agag |
201 |
Q |
| |
|
|||| |
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|
| T |
30343477 |
agag |
30343474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 23919415 - 23919209
Alignment:
| Q |
1 |
tttaccataacagaaaatttaaaatctgcccccac--cccgccatagtgtcgttgcggctgatatttgataacactactaagaaagcaacacctagattt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23919415 |
tttaccataacagaaaatttaaaatctgccaccacaacccgccatagtgtcgttgtggctgatatttgataacactactaagaaagcaacacctagattt |
23919316 |
T |
|
| Q |
99 |
cacgtttgattatgagaaaattcattcatatacctaattgcatatgcacataaatta-nnnnnnngctctagggaagtaactaactttaaatttatgtgc |
197 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
23919315 |
caggtttgattatgagaaaattcattcatatacctaattgcatatgcacataaattatttttgttgctctaggtaagtaactaactttaaatttatgtgc |
23919216 |
T |
|
| Q |
198 |
agagctg |
204 |
Q |
| |
|
||||||| |
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|
| T |
23919215 |
agagctg |
23919209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 25284359 - 25284458
Alignment:
| Q |
43 |
tagtgtcgttgcggctgatatttgataacactactaagaaagcaacacctagatttcacgtttgattatgagaaaattcattcatatacctaattgcata |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
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| T |
25284359 |
tagtgtcgttgcggctgatatttgataacactactaagaaagcaacgcctagatttcaggtttgattatgagaaaattcattcatatacttaagtgcata |
25284458 |
T |
|
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