View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_104 (Length: 217)

Name: NF17716_low_104
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_104
NF17716_low_104
[»] chr8 (8 HSPs)
chr8 (1-199)||(3159700-3159904)
chr8 (1-199)||(2889823-2890023)
chr8 (1-199)||(3145112-3145312)
chr8 (1-199)||(2875468-2875670)
chr8 (32-199)||(2796061-2796233)
chr8 (65-155)||(27401733-27401823)
chr8 (65-141)||(28867212-28867288)
chr8 (107-155)||(37855070-37855118)
[»] chr1 (4 HSPs)
chr1 (65-179)||(16426318-16426432)
chr1 (113-163)||(30883243-30883293)
chr1 (107-147)||(10171653-10171693)
chr1 (91-155)||(50127502-50127566)
[»] chr2 (10 HSPs)
chr2 (65-163)||(41848921-41849019)
chr2 (107-187)||(9929509-9929589)
chr2 (65-144)||(16661339-16661418)
chr2 (113-191)||(32201033-32201111)
chr2 (91-163)||(18724899-18724972)
chr2 (108-164)||(4748264-4748320)
chr2 (4-162)||(17651162-17651329)
chr2 (65-142)||(38783772-38783849)
chr2 (117-155)||(26575977-26576015)
chr2 (91-151)||(44650146-44650206)
[»] chr4 (3 HSPs)
chr4 (73-145)||(32593713-32593785)
chr4 (107-174)||(54305547-54305614)
chr4 (113-155)||(55680647-55680689)
[»] chr7 (8 HSPs)
chr7 (91-147)||(11812689-11812745)
chr7 (68-141)||(9730072-9730145)
chr7 (91-147)||(11809458-11809514)
chr7 (100-147)||(11814588-11814635)
chr7 (91-147)||(11815691-11815747)
chr7 (107-168)||(5741577-5741638)
chr7 (113-174)||(45216125-45216186)
chr7 (91-147)||(27616243-27616299)
[»] chr5 (2 HSPs)
chr5 (67-147)||(41815776-41815855)
chr5 (107-163)||(32676838-32676894)
[»] chr6 (6 HSPs)
chr6 (65-155)||(2602000-2602090)
chr6 (113-174)||(34011361-34011422)
chr6 (113-155)||(34013447-34013489)
chr6 (107-167)||(19294283-19294343)
chr6 (73-155)||(33235021-33235103)
chr6 (107-164)||(14494643-14494700)
[»] chr3 (5 HSPs)
chr3 (91-147)||(17716032-17716088)
chr3 (91-147)||(19017261-19017317)
chr3 (113-155)||(52068843-52068885)
chr3 (113-174)||(43922153-43922214)
chr3 (107-163)||(32706377-32706433)
[»] scaffold0325 (1 HSPs)
scaffold0325 (91-147)||(12796-12852)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 3159904 - 3159700
Alignment:
Q  1 tactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagt 100  Q
    ||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  3159904 tactattgtaacttgttatagacctttttttaatgaaataaattgctcaagttagatacatatttgattctcaatttagatctttcataaataaattagt 3159805  T
Q  101 atacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgac------gtgttagtgtcggtgttgtgtcaaatgttagtgtcggagttgc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||      |||| |||||||||||||||||| ||||| |||||||||||||    
T  3159804 atacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttaacgtgtcagtgtcagtgtcggtgttgtgtcagatgttcgtgtcggagttgc 3159705  T
Q  195 taact 199  Q
    |||||    
T  3159704 taact 3159700  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 2889823 - 2890023
Alignment:
Q  1 tactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagt 100  Q
    |||||||||| |||||||||||||       ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  2889823 tactattgtatcttgttatagacctttttttaatgaaataaattgctcaagtaagatacatacgtgattctcaatttagatctttcataaataaattagt 2889922  T
Q  101 atacaggtagcagtgtcggtgtcctatg--ttttttacattagcggtgttgacgtgttagtgtcggtgttgtgtcaaatgttagtgtcggagttgctaac 198  Q
    ||||| ||||||||||||||||||||||  ||||||||||||| |||||  |||||| |||||||||| ||||||| ||||  |||||||||| ||||||    
T  2889923 atacaagtagcagtgtcggtgtcctatgttttttttacattagtggtgtcaacgtgtcagtgtcggtgctgtgtcagatgtctgtgtcggagtcgctaac 2890022  T
Q  199 t 199  Q
    |    
T  2890023 t 2890023  T

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Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 3145312 - 3145112
Alignment:
Q  1 tactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagt 100  Q
    |||||||||| |||||||||||||       ||||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||| ||||||||||    
T  3145312 tactattgtatcttgttatagacctttttttaatgaaataaattgctcaagtaagatacatgcgtgattctcaatttagatctttcataaataaattagt 3145213  T
Q  101 atacaggtagcagtgtcggtgtcctatgtt--ttttacattagcggtgttgacgtgttagtgtcggtgttgtgtcaaatgttagtgtcggagttgctaac 198  Q
    ||||| |||| |||||||||||||||||||  ||||||||||| |||||  |||||| |||||||||| ||||||| ||||  |||||||||| ||||||    
T  3145212 atacaagtagtagtgtcggtgtcctatgttttttttacattagtggtgtcaacgtgtcagtgtcggtgctgtgtcagatgtccgtgtcggagtcgctaac 3145113  T
Q  199 t 199  Q
    |    
T  3145112 t 3145112  T

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Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 2875468 - 2875670
Alignment:
Q  1 tactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagt 100  Q
    |||||||||| ||||||||| |||       |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  2875468 tactattgtatcttgttataaacctttttttaatgaactaaattgctcaagttagatacatatgtgattctcaattaagatctttcataaatagattagt 2875567  T
Q  101 atacaggtagcagtgtcggtgtcctatg----ttttttacattagcggtgttgacgtgttagtgtcggtgttgtgtcaaatgttagtgtcggagttgcta 196  Q
    |||||||| |||||||||||||||||||    ||||||||||||||||||| |||||||   ||| |||||| ||||| || |  |||||||||| ||||    
T  2875568 atacaggtggcagtgtcggtgtcctatgttttttttttacattagcggtgtcgacgtgtctttgttggtgttttgtcagatatccgtgtcggagtcgcta 2875667  T
Q  197 act 199  Q
    |||    
T  2875668 act 2875670  T

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Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 2796233 - 2796061
Alignment:
Q  32 aatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttt 131  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||| ||||||||||||||    
T  2796233 aatgaaataaattgctcaagttagatgcatatgtgattctcaattaagatctttcataaataaattagtatagaagtagcagtgtgggtgtcctatgttt 2796134  T
Q  132 t-----ttacattagcggtgttgacgtgttagtgtcggtgttgtgtcaaatgttagtgtcggagttgctaact 199  Q
    |     |||||||||||| || | ||| | |||||||||||| | ||| || |  |||||||||| |||||||    
T  2796133 tttttattacattagcggcgtcggcgtatcagtgtcggtgttttatcagatatccgtgtcggagtcgctaact 2796061  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 27401823 - 27401733
Alignment:
Q  65 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    |||||||||||| |||  ||| ||| |||||||| |||| || |||| || | || ||||||||||||||||||||||||||||| |||||    
T  27401823 tgattctcaattgagacattttataaataaattaatatatagatagcggtattggcgtcctatgttttttacattagcggtgttggcgtgt 27401733  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 28867288 - 28867212
Alignment:
Q  65 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattag 141  Q
    |||||||||||||| || ||| ||| |||||||| |||| || ||| ||||| |||||| |||||||| ||||||||    
T  28867288 tgattctcaatttaaatgttttataaataaattaatatatagatagtagtgttggtgtcttatgttttatacattag 28867212  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 37855118 - 37855070
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    ||||| ||||||||||||||| |||||||||||| || ||||| |||||    
T  37855118 gtagcggtgtcggtgtcctatattttttacattatcgatgttggcgtgt 37855070  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 16426432 - 16426318
Alignment:
Q  65 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcgg 164  Q
    ||||||| |||||| |||||| ||| |||||||| |||| ||||||| ||||| |||||||||| ||||||||||| ||||||||||||||  ||||| |    
T  16426432 tgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtcctatgctttttacattaacggtgttgacgtgtccgtgtcag 16426333  T
Q  165 tgttgtgtcaaatgt 179  Q
    |||||||||| ||||    
T  16426332 tgttgtgtcagatgt 16426318  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 30883243 - 30883293
Alignment:
Q  113 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30883243 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgtcagtgtcg 30883293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 10171653 - 10171693
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    ||||| ||||||||||||||| ||||||||| |||||||||    
T  10171653 gtagcggtgtcggtgtcctatattttttacactagcggtgt 10171693  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 50127502 - 50127566
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    |||||||| |||| || |||| ||| || ||||||||||||||||||||||| || | |||||||    
T  50127502 ataaattaatatatagatagcggtggcgatgtcctatgttttttacattagcagtatcgacgtgt 50127566  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 41849019 - 41848921
Alignment:
Q  65 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcg 163  Q
    ||||||||||||||||| ||| ||| |||||||| |||| || |||| ||||||||||||||| ||||||||||||||||||| || |||| |||||||    
T  41849019 tgattctcaatttagatattttataaataaattaatatatagatagcggtgtcggtgtcctatattttttacattagcggtgtcgatgtgtcagtgtcg 41848921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 9929589 - 9929509
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcggtgttgtgtcaaatgttagtgtcg 187  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||  ||||| |||| ||||||| |||| ||||||    
T  9929589 gtagcagtgttggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaagtgtttgtgtcg 9929509  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 16661339 - 16661418
Alignment:
Q  65 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcgg 144  Q
    ||||||||||||||||||||| ||| || ||||| |||| | ||||| || ||||||||| |||||| ||||||||||||    
T  16661339 tgattctcaatttagatcttttatacatgaattaatatatatgtagcggtatcggtgtccaatgtttattacattagcgg 16661418  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 32201033 - 32201111
Alignment:
Q  113 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcggtgttgtgtcaaatgttagtgtcggagt 191  Q
    ||||||||||||||| ||||||||||||||||||| |||||||  ||||| |||| ||||||  |||| |||| |||||    
T  32201033 gtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgttcgtgttggagt 32201111  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 18724899 - 18724972
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctat-gttttttacattagcggtgttgacgtgttagtgtcg 163  Q
    |||||||| |||| ||||||| ||||||||||||||| ||||||||||||| |||||| ||||| | |||||||    
T  18724899 ataaattaatatataggtagcggtgtcggtgtcctatggttttttacattatcggtgtcgacgtatcagtgtcg 18724972  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 4748264 - 4748320
Alignment:
Q  108 tagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcgg 164  Q
    |||||||||||||||||||| ||||||||||||||||||| || ||||  |||||||    
T  4748264 tagcagtgtcggtgtcctatattttttacattagcggtgtcgatgtgtccgtgtcgg 4748320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 17651329 - 17651162
Alignment:
Q  4 tattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgt---------gattctcaatttagatctttcatagataa 94  Q
    ||||||||||||||||||| |       ||||||||||||| |||||||||||| |||||||         | || | ||||||||||||  ||| ||||    
T  17651329 tattgtaacttgttatagaacttcttgtaatgaaataaattgctcaagttagatgcatatgtatgtattttggtttttaatttagatcttatataaataa 17651230  T
Q  95 attagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtc 162  Q
    |||| |||| ||  ||| ||||| || |||||||||||||| ||||||| ||| |||||||| |||||    
T  17651229 attaatatatagccagcggtgtcagtatcctatgttttttatattagcgatgtcgacgtgttcgtgtc 17651162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 38783772 - 38783849
Alignment:
Q  65 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagc 142  Q
    |||||||||||| |||| ||| ||| |||||||| |||| || |||||| ||||||||||| ||  ||||||||||||    
T  38783772 tgattctcaattcagatattttataaataaattaatatatagatagcagcgtcggtgtcctctgacttttacattagc 38783849  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 26576015 - 26575977
Alignment:
Q  117 cggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  26576015 cggtgtcctatattttttacattagcggtgtcgacgtgt 26575977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 44650146 - 44650206
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgac 151  Q
    |||||||| |||| | |||||||||||  |||||||| ||||||| |||| ||||||||||    
T  44650146 ataaattaatatatatgtagcagtgtcaatgtcctatattttttatattaacggtgttgac 44650206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 32593785 - 32593713
Alignment:
Q  73 aatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggt 145  Q
    |||||||||| || ||| ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  32593785 aatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtcctatggtttttacattagcggt 32593713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 54305614 - 54305547
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcggtgttgtgtca 174  Q
    ||||| |||||||||||||||  |||||||||||||| ||| |||||||  ||||| |||||||||||    
T  54305614 gtagcggtgtcggtgtcctataatttttacattagcgatgtcgacgtgtccgtgtcagtgttgtgtca 54305547  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 55680689 - 55680647
Alignment:
Q  113 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  55680689 gtgtcggtgtcctatattttttacattagcggtgtcgacgtgt 55680647  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 11812689 - 11812745
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||    
T  11812689 ataaattaatatataggtagctgtgtcggtgtcctatgttttttacattagcggtgt 11812745  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 9730072 - 9730145
Alignment:
Q  68 ttctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattag 141  Q
    |||| ||||||||||||| ||| |||||||| |||| ||||||| ||||| |||| |||| |||||||||||||    
T  9730072 ttcttaatttagatcttttataaataaattaatatataggtagcggtgtcagtgttctatattttttacattag 9730145  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 11809458 - 11809514
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    |||||||| |||| ||||||||||||||||||| |||| |||||||||||| |||||    
T  11809458 ataaattaatatataggtagcagtgtcggtgtcttatgatttttacattagtggtgt 11809514  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 11814588 - 11814635
Alignment:
Q  100 tatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  11814588 tatataggtaacagtgtcggtgtcctatgttttttacattaacggtgt 11814635  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 11815691 - 11815747
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    |||||||| || | || |||||||||| ||||||||| |||||||||||||||||||    
T  11815691 ataaattaataaatagatagcagtgtcagtgtcctatattttttacattagcggtgt 11815747  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 5741638 - 5741577
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcggtgtt 168  Q
    ||||| |||||||||| ||| ||||||||||||| | ||||||| |||| |||||| |||||    
T  5741638 gtagcggtgtcggtgttctaagttttttacattaacagtgttgatgtgtcagtgtccgtgtt 5741577  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 45216125 - 45216186
Alignment:
Q  113 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcggtgttgtgtca 174  Q
    ||||| ||||| ||| ||||||||||||||||||| |||||||  ||||| |||| ||||||    
T  45216125 gtgtccgtgtcttatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtca 45216186  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 27616299 - 27616243
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    ||||||||  ||||| ||||| ||||||||||||| | |||||||||||| ||||||    
T  27616299 ataaattaacatacatgtagcggtgtcggtgtcctgtattttttacattaacggtgt 27616243  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 41815776 - 41815855
Alignment:
Q  67 attctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    ||||||||||| ||||||| ||| |||||||| |||| | ||||| ||||||||||||||| |||||||||||||||||||    
T  41815776 attctcaatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtcctat-ttttttacattagcggtgt 41815855  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 32676838 - 32676894
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcg 163  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  32676838 gtagcagggtcggtgtcctattttttttacattagcggtgtcgacgtgtcagtgtcg 32676894  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 2602090 - 2602000
Alignment:
Q  65 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    ||||||| ||||||||||||| ||| |||||||| |||| ||||||  |||||||||||| | ||||||||||||| | |||| |||||||    
T  2602090 tgattcttaatttagatcttttataaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgacgtgt 2602000  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 34011361 - 34011422
Alignment:
Q  113 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcggtgttgtgtca 174  Q
    ||||||||||||||| |||||||||||||||| || |||||||  ||||| |||||||||||    
T  34011361 gtgtcggtgtcctatattttttacattagcggcgtcgacgtgtccgtgtcagtgttgtgtca 34011422  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 34013489 - 34013447
Alignment:
Q  113 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  34013489 gtgtcggtgtcctatattttttacattagcggtgtcgacgtgt 34013447  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 19294343 - 19294283
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcggtgt 167  Q
    ||||| || |||||||||||| ||||||||||||||||||| || ||||| ||||| ||||    
T  19294343 gtagcggtatcggtgtcctatattttttacattagcggtgtcgatgtgttcgtgtcagtgt 19294283  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 33235021 - 33235103
Alignment:
Q  73 aatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    ||||||||| ||| ||| |||||||| || | ||||| || ||||||||||||| | ||||||||||| || ||| |||||||    
T  33235021 aatttagatattttataaataaattaatacataggtaacaatgtcggtgtcctaggctttttacattaacgatgtcgacgtgt 33235103  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 14494643 - 14494700
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcgg 164  Q
    ||||| ||||||||||||| | | ||||||||||||||||| |||||||  |||||||    
T  14494643 gtagcggtgtcggtgtcctgtatattttacattagcggtgtcgacgtgtccgtgtcgg 14494700  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 17716032 - 17716088
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    ||||||||||||| | ||||| ||||| ||||||||| || ||||||||||||||||    
T  17716032 ataaattagtatatatgtagcggtgtcagtgtcctatattatttacattagcggtgt 17716088  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 19017261 - 19017317
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    ||||||||||||| | ||||| ||||| ||||||||| || ||||||||||||||||    
T  19017261 ataaattagtatatatgtagcggtgtcagtgtcctatattatttacattagcggtgt 19017317  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 52068843 - 52068885
Alignment:
Q  113 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgt 155  Q
    |||||| |||||||||||||| |||||||| ||||||||||||    
T  52068843 gtgtcgatgtcctatgtttttgacattagcagtgttgacgtgt 52068885  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 43922153 - 43922214
Alignment:
Q  113 gtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcggtgttgtgtca 174  Q
    ||||||||||||||| ||||||||| ||||||||| || ||||  ||||| |||| ||||||    
T  43922153 gtgtcggtgtcctatattttttacactagcggtgtcgaagtgtccgtgtcagtgtcgtgtca 43922214  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 32706377 - 32706433
Alignment:
Q  107 gtagcagtgtcggtgtcctatgttttttacattagcggtgttgacgtgttagtgtcg 163  Q
    |||||||||| |||||||||| |||||||||||||| || | || |||| |||||||    
T  32706377 gtagcagtgttggtgtcctatattttttacattagcagtctcgaggtgtcagtgtcg 32706433  T

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Target: scaffold0325 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 12852 - 12796
Alignment:
Q  91 ataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgt 147  Q
    |||||||| |||| | ||||| ||||||||||||| | |||||||||||||| ||||    
T  12852 ataaattaatatatatgtagcggtgtcggtgtcctgtattttttacattagcagtgt 12796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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