View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17716_low_11 (Length: 529)

Name: NF17716_low_11
Description: NF17716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17716_low_11
NF17716_low_11
[»] chr1 (3 HSPs)
chr1 (330-513)||(7743806-7743993)
chr1 (103-294)||(7743985-7744172)
chr1 (34-78)||(7744197-7744241)
[»] chr3 (1 HSPs)
chr3 (386-513)||(40865336-40865468)
[»] scaffold0132 (1 HSPs)
scaffold0132 (226-381)||(23836-23991)
[»] scaffold0211 (1 HSPs)
scaffold0211 (226-379)||(14516-14669)
[»] chr6 (1 HSPs)
chr6 (225-351)||(19483827-19483953)
[»] scaffold0018 (1 HSPs)
scaffold0018 (220-381)||(5398-5559)
[»] chr2 (2 HSPs)
chr2 (220-381)||(24813454-24813615)
chr2 (325-381)||(19311790-19311846)
[»] chr8 (2 HSPs)
chr8 (226-381)||(22163374-22163529)
chr8 (226-381)||(23784632-23784787)
[»] scaffold0387 (1 HSPs)
scaffold0387 (226-379)||(8480-8633)
[»] scaffold0738 (1 HSPs)
scaffold0738 (226-267)||(3613-3654)
[»] scaffold0547 (1 HSPs)
scaffold0547 (325-381)||(2093-2149)
[»] chr4 (1 HSPs)
chr4 (325-381)||(16818148-16818204)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 8e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 330 - 513
Target Start/End: Complemental strand, 7743993 - 7743806
Alignment:
Q  330 agagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgaggatccaaatgtcttctttttcacaacttctctacat----gcatgaca 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||||||||    
T  7743993 agagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgaggatccaaatgtcttctttttcacaacttctctaccttcctgcatgaca 7743894  T
Q  426 aatacattttgtaaagaaatggagactccaattttcaacgaaattaaacattcaacaataaaaatcatgcattcaacaggacagaaac 513  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7743893 aatacattttgtaaataaatggagactccaattttcaacgaaattaaacattcaacaataaaaatcatgcattcaacaggacagaaac 7743806  T

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Target: chr1; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 103 - 294
Target Start/End: Complemental strand, 7744172 - 7743985
Alignment:
Q  103 taagaagcaatactcagaagataatgattttcatagatatgttcagaagcaataaatagagtacaacattttagcaagataattttttacagaagaaact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7744172 taagaagcaatactcagaagataatgattttcatagatatgttcagaagcaataaatagagtacaacattttagcaagataattttttacagaagaaact 7744073  T
Q  203 aaacaagcaataacaataatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttct 294  Q
    |||||| ||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  7744072 aaacaaacaataacaataatagatgtgcaactaag----ggcttgtttagaggctgcttccatcaagaatttcatgttatctgagagcttct 7743985  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 7744241 - 7744197
Alignment:
Q  34 gagaattcattcagaaggtgagaacaaaaacatttgtaacggagc 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7744241 gagaattcattcagaaggtgagaacaaaaacatttgtaacggagc 7744197  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 386 - 513
Target Start/End: Complemental strand, 40865468 - 40865336
Alignment:
Q  386 caaatgtcttctttttcacaacttctctacat----gcatgacaaatacattttgtaaagaaa-tggagactccaattttcaacgaaattaaacattcaa 480  Q
    |||||| ||||||||||||||||||||||| |    ||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||  ||||||    
T  40865468 caaatgccttctttttcacaacttctctaccttcctgcatgacaaatacattttgtaaagaaaatgtggactcgaattttcaacgaaattaacaattcaa 40865369  T
Q  481 caataaaaatcatgcattcaacaggacagaaac 513  Q
    ||||| ||||||||||||||||| |||||||||    
T  40865368 caatacaaatcatgcattcaacaagacagaaac 40865336  T

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Target: scaffold0132 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 381
Target Start/End: Complemental strand, 23991 - 23836
Alignment:
Q  226 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 325  Q
    ||||||||||||| | ||||||||||||||||  |||||||||  ||||||  |  ||||| |||||||||| ||| ||||||||||| |    ||||||    
T  23991 tgtgcaactaaggttgggcttgtttagaggctacttccatcaaatatttcacttgttctgatagtttcttcatctcttctgcttgcttagacacaacatc 23892  T
Q  326 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 381  Q
    ||||||| ||||||||||||| |||| ||| ||||  |||||||| || |||||||    
T  23891 ttccagaacttctgtcttctgtttcatcttctgaagttcttcatcttttgcttgag 23836  T

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Target: scaffold0211 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 379
Target Start/End: Complemental strand, 14669 - 14516
Alignment:
Q  226 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 325  Q
    ||||||||||||| | ||||||||||||||||| |||||||||  ||||||  |  ||||| |||||||||| ||| ||||| ||||| |    ||||||    
T  14669 tgtgcaactaaggttgggcttgtttagaggctgcttccatcaaatatttcacttgttctgatagtttcttcatctcttctgcctgcttagacacaacatc 14570  T
Q  326 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttg 379  Q
    ||||||| | ||||||||||| |||| ||| || |  |||||||| ||||||||    
T  14569 ttccagaacctctgtcttctgtttcatcttctgtagttcttcatctttagcttg 14516  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 351
Target Start/End: Original strand, 19483827 - 19483953
Alignment:
Q  225 atgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacat 324  Q
    |||||||||||||| | ||||||||||||||||| | |||||||  |||| |  |  ||||| |||||||||||||| ||||||| ||| | |  |||||    
T  19483827 atgtgcaactaaggttgggcttgtttagaggctgctgccatcaaatattttacatgttctgatagtttcttcaactcttctgctttcttagaaacaacat 19483926  T
Q  325 cttccagagcttctgtcttctgcttca 351  Q
    |||||||| | ||||||||||| ||||    
T  19483927 cttccagaacctctgtcttctgtttca 19483953  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 381
Target Start/End: Complemental strand, 5559 - 5398
Alignment:
Q  220 aatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagt 319  Q
    ||||| ||||||||||||| | ||||||||||||||||  |||||||||| ||| ||  |  ||||| || |||||||  || |||| ||||||||        
T  5559 aataggtgtgcaactaaggttgggcttgtttagaggctacttccatcaagtattacacttgttctgatagcttcttcatttcttctgtttgctttgacac 5460  T
Q  320 aacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 381  Q
    |||| |||||||| ||||||||||||| |||| ||| ||||  | |||||| ||||||||||    
T  5459 aacagcttccagatcttctgtcttctgtttcatcttctgaagtttttcatctttagcttgag 5398  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 381
Target Start/End: Complemental strand, 24813615 - 24813454
Alignment:
Q  220 aatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagt 319  Q
    ||||| ||||||||||||| | ||||||||||||||||  |||||||||| ||| ||  |  ||||| || |||||||  || |||| ||||||||        
T  24813615 aataggtgtgcaactaaggttgggcttgtttagaggctacttccatcaagtattacacttgttctgatagcttcttcatttcttctgtttgctttgacac 24813516  T
Q  320 aacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 381  Q
    |||| |||||||| ||||||||||||| |||| ||| ||||  | |||||| ||||||||||    
T  24813515 aacagcttccagatcttctgtcttctgtttcatcttctgaagtttttcatctttagcttgag 24813454  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 19311846 - 19311790
Alignment:
Q  325 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 381  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  19311846 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 19311790  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 381
Target Start/End: Complemental strand, 22163529 - 22163374
Alignment:
Q  226 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 325  Q
    ||||||||||||| ||||||||||||||||||  |||||||||  ||||||  |  ||||| | |  |||||  || |||| |||||| | |  |||| |    
T  22163529 tgtgcaactaaggtttggcttgtttagaggctacttccatcaaatatttcacttgttctgataatagcttcatgtcttctgtttgcttagaaacaacagc 22163430  T
Q  326 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 381  Q
    |||||||| |||||||||||  |||| ||| ||||  |||||||||||||||||||    
T  22163429 ttccagagtttctgtcttctttttcatcttctgaagttcttcatccttagcttgag 22163374  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 381
Target Start/End: Original strand, 23784632 - 23784787
Alignment:
Q  226 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 325  Q
    ||||||||||||| |||||||| |||||||||  |||||||||| ||||||  |  ||||| |    |||||  || |||| |||||| | |  |||| |    
T  23784632 tgtgcaactaaggtttggcttgattagaggctacttccatcaagtatttcacttgttctgataacagcttcatgtcttctgtttgcttagaaacaacagc 23784731  T
Q  326 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 381  Q
    |||||||| |||||||||||  |||| ||| ||||  |||||||||||||||||||    
T  23784732 ttccagagtttctgtcttctttttcatcttctgaagttcttcatccttagcttgag 23784787  T

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Target: scaffold0387 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 379
Target Start/End: Original strand, 8480 - 8633
Alignment:
Q  226 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 325  Q
    ||||| ||||||| | ||||||||||| | ||| |||||||||  |||| |  |  ||||| |||||||||| ||| ||||||||||| | |  ||||||    
T  8480 tgtgctactaaggttgggcttgtttagtgactgcttccatcaaatattttacttgttctgatagtttcttcatctcttctgcttgcttagaaacaacatc 8579  T
Q  326 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttg 379  Q
    ||||||| | ||||||||||| |||| ||| ||||  |||||||| || |||||    
T  8580 ttccagaacctctgtcttctgtttcatcttctgaagttcttcatcttttgcttg 8633  T

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Target: scaffold0738 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0738
Description:

Target: scaffold0738; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 3654 - 3613
Alignment:
Q  226 tgtgcaactaagggttggcttgtttagaggctgtttccatca 267  Q
    ||||||||||||| ||||||||||||||||||  ||||||||    
T  3654 tgtgcaactaaggtttggcttgtttagaggctacttccatca 3613  T

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Target: scaffold0547 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0547
Description:

Target: scaffold0547; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 2093 - 2149
Alignment:
Q  325 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 381  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  2093 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 2149  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 16818204 - 16818148
Alignment:
Q  325 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 381  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  16818204 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 16818148  T

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